Browse Element(s) Details


Os.10459.1.S1_at

Description gb:NM_187975.1
DB_XREF= gi:34903033
TID=Os.10459.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g157909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15760NANA1+8864992..8871146retrotransposon protein, putative, unclassified
LOC_Os01g15770Os.34400.1.S1_at10/111+8880280..8882190expressed protein
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10459.1.S1_at--976--2551NONE
AACTGATGTGCAGTACATGTGAAAA
NONE
Os.10459.1.S1_at--569--10311Chr01:8894620..8894644 (25 bp)
TTTCAACTAGTCCTAAACTCCCAGA
LOC_Os01g15790
Os.10459.1.S1_at--279--10051Chr01:8894627..8894651 (25 bp)
TAGTCCTAAACTCCCAGAATTTCTG
LOC_Os01g15790
Os.10459.1.S1_at--454--2551Chr01:8894635..8894659 (25 bp)
AACTCCCAGAATTTCTGCTGTGAAA
LOC_Os01g15790
Os.10459.1.S1_at--116--7351Chr01:8894654..8894678 (25 bp)
GTGAAATTTTAAACAACCGCTACAT
LOC_Os01g15790
Os.10459.1.S1_at--978--1791Chr01:8894669..8894787 (25 bp)
ACCGCTACATTATTTACATGACTTG
LOC_Os01g15790
Os.10459.1.S1_at--137--2371NONE
AAACCTTCCTTGAAGTTCATATACA
NONE
Os.10459.1.S1_at--1144--3011Chr01:8895810..8895834 (25 bp)
AATCCAATGAGAGGCTGGGCAACAT
LOC_Os01g15790
Os.10459.1.S1_at--448--8331Chr01:8895822..8895846 (25 bp)
GGCTGGGCAACATTTGGGATTATTT
LOC_Os01g15790
Os.10459.1.S1_at--147--7671Chr01:8895837..8896118 (25 bp)
GGGATTATTTCTTGCATCTTCATTG
LOC_Os01g15790
Os.10459.1.S1_at--965--10312Chr01:8895844..8896125 (25 bp)
TTTCTTGCATCTTCATTGTGTTGTC
LOC_Os01g15790
Target Sequence 
AACTGATGTGCAGTACATGTGAAAATTTTCAACTAGTCCTAAACTCCCAGAATTTCTGCTGTGAAATTTTAAACAACCGC
TACATTATTTACATGACTTGTTGGAAAACCTTCCTTGAAGTTCATATACAAGAAAAAGAGAGTAATCCAATGAGAGGCTG
GGCAACATTTGGGATTATTTCTTGCATCTTCATTGTGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis