Browse Element(s) Details


Os.10529.1.S1_s_at

Description gb:AU166632
DB_XREF= gi:12405031
DB_XREF=AU166632
CLONE=C30389
TID=Os.10529.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10529 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0514011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10529.1.S1_s_at--1008--9431Chr11:2255154..2255179 (25 bp)
TCTGTCATACTTCACCAGGCTTATG
LOC_Os11g05140
Os.10529.1.S1_s_at--988--6531Chr11:2254971..2254995 (25 bp)
GATTACCTTGGACAAACTTCAGCAG
LOC_Os11g05140
Os.10529.1.S1_s_at--797--9731Chr11:2254875..2254899 (25 bp)
TAATTCTAGGGCTCCAGTGCCAGAC
LOC_Os11g05140
Os.10529.1.S1_s_at--1115--1131Chr11:2254860..2254884 (25 bp)
AGTGCCAGACACAGATGCTGCTCCA
LOC_Os11g05140
Os.10529.1.S1_s_at--503--611Chr11:2254846..2254870 (25 bp)
ATGCTGCTCCACCATAGTTAACGGT
LOC_Os11g05140
Os.10529.1.S1_s_at--59--8571Chr11:2253257..2253281 (25 bp)
TGGATGCACCTGATGCGGCATTTGT
LOC_Os11g05140
Os.10529.1.S1_s_at--205--8691Chr11:2253235..2253259 (25 bp)
TGTGAATTGTGATCAGCGCTGCTGC
LOC_Os11g05140
Os.10529.1.S1_s_at--870--3831Chr11:2253217..2253241 (25 bp)
CTGCTGCACCTGACGAATAATTTTG
LOC_Os11g05140
Os.10529.1.S1_s_at--977--10251Chr11:2253196..2253220 (25 bp)
TTTGTTTTCCTGTTGCATCTGACGA
LOC_Os11g05140
Os.10529.1.S1_s_at--190--10271Chr11:2253166..2253190 (25 bp)
TTTGATTTTCTTTTGCCGCATGACT
LOC_Os11g05140
Os.10529.1.S1_s_at--566--4511Chr11:2253152..2253176 (25 bp)
GCCGCATGACTCGAACTAAACTGAT
LOC_Os11g05140
Target Sequence 
TCTGTCATACTTCACCAGGCTTATGATGGTTTCCGGGCAATAGCTGCGGAGACAGGCTCATTGTATGAGCATCTAAGGCA
AAAAGACCATCAGACAAGTGATGATATCATGATTACCTTGGACAAACTTCAGCAGATTGCTTTGCATCATATGAAGGATA
TTGCCTGCCNATNAAGCCNAACAATGTAGTTCAACCNATCTGATCAGAGTAATTCTAGGGCTCCAGTGCCAGACACAGAT
GCTGCTCCACCATAGTTAACGGTGCTACCAAGCAATTGATGGAGCGCGAGGATGTAATCAAGAATCCTGTACAAATGGTT
GTGTTTAGCAGGAAANTGGTAACTTCAGTCTTCTGGCTGNTTCGCTGGATGCACCTGATGCGGCATTTGTGAATTGTGAT
CAGCGCTGCTGCACCTGACGAATAATTTTGTTTTCCTGTTGCATCTGACGAATGATTTTGATTTTCTTTTGCCGCATGAC
TCGAACTAAACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10529.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis