Browse Element(s) Details


Os.10534.1.S1_at

Description gb:AK060874.1
DB_XREF= gi:32970892
TID=Os.10534.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A01, full insert sequence.
FL= gb:AK104624.1 gb:AK104203.1 gb:AK067327.1 gb:AK060874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0970411/11HAD superfamily phosphatase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09670OsAffx.26805.1.S1_at11/115+5441685..5442425hypothetical protein
LOC_Os05g09680OsAffx.26806.1.S1_at11/115+5444670..5447995hypothetical protein
LOC_Os05g09700NANA5+5450156..5450362hypothetical protein
LOC_Os05g09704Os.10534.1.S1_at11/115+5452049..5454029HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09708NANA5+5460559..5462104hypothetical protein
LOC_Os05g09712OsAffx.22421.4.S1_x_at1/115+5465639..5467936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09712Os.26886.3.S1_x_at1/115+5465639..5467936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.27435.1.S1_x_at4/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.46334.1.S1_x_at2/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716OsAffx.22421.2.S1_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.51856.1.S2_x_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.51856.1.S2_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.46334.1.S1_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0003993molecular_functionacid phosphatase activity
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10534.1.S1_at--880--1151Chr05:5452611..5452635 (25 bp)
AGTACACTGCGGCTTTACCGACGGT
LOC_Os05g09704
Os.10534.1.S1_at--708--4091Chr05:5452593..5452617 (25 bp)
CGACGGTTACTCCAGCTTGGTATAA
LOC_Os05g09704
Os.10534.1.S1_at--748--8111Chr05:5452532..5452556 (25 bp)
GGACGGTCACAACCAACAACCTTAT
LOC_Os05g09704
Os.10534.1.S1_at--868--31Chr05:5452490..5452514 (25 bp)
ATTGGGAGAAGCTTGTGCTGCAGCC
LOC_Os05g09704
Os.10534.1.S1_at--1003--10431Chr05:5452463..5452487 (25 bp)
TTAGGCTTCAGACCTCGACGTTGGC
LOC_Os05g09704
Os.10534.1.S1_at--244--5771Chr05:5452447..5452471 (25 bp)
GACGTTGGCGTTCAAGACCTGCGAA
LOC_Os05g09704
Os.10534.1.S1_at--855--6231Chr05:5452404..5452428 (25 bp)
GATGGCTACATCATCGTCGGCAACA
LOC_Os05g09704
Os.10534.1.S1_at--174--7951Chr05:5452277..5452301 (25 bp)
GGATATATACCTTGTTTGTGTCTGT
LOC_Os05g09704
Os.10534.1.S1_at--802--6831Chr05:5452254..5452278 (25 bp)
GTTTCATCTACTCGTTTTTTGTCAT
LOC_Os05g09704
Os.10534.1.S1_at--686--7071Chr05:5452216..5452240 (25 bp)
GTAATTAATCTTTGACGCGTGCATA
LOC_Os05g09704
Os.10534.1.S1_at--574--351Chr05:5452143..5452167 (25 bp)
ATAACGCTTGTTTGGCAGTTGGCCA
LOC_Os05g09704
Target Sequence 
AGTACACTGCGGCTTTACCGACGGTTACTCCAGCTTGGTATAAAGCCGGTGTTCCTGACAGACCGCACCGAGGACCAGAG
GACGGTCACAACCAACAACCTTATTAAGCAGGGCTACTGCAATTGGGAGAAGCTTGTGCTGCAGCCGGTTAGGCTTCAGA
CCTCGACGTTGGCGTTCAAGACCTGCGAACGACAGAAGCTGGTGAATGATGGCTACATCATCGTCGGCAACATTGGCGAC
CAGTGGAACGACATCCGCCGCTCGCCGGATGGTTGCCGCACCTTTAAGTTCCCCAACCCCATGTACTATGTCGACTAGCT
AGCTAGCTATCCATGGATATATACCTTGTTTGTGTCTGTTTCATCTACTCGTTTTTTGTCATGAATTTGCATCTAGTAAT
TAATCTTTGACGCGTGCATATGTTTGATATGTTTGTTAATTTTTCGTGAGATGAAAATTGAATTTGTAATAACGCTTGTT
TGGCAGTTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis