Browse Element(s) Details


Os.10552.1.S1_at

Description gb:AK066093.1
DB_XREF= gi:32976111
TID=Os.10552.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059O06, full insert sequence.
FL= gb:AK066093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4635011/11cell division cycle protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10552.1.S1_at--77--2151Chr02:28247007..28247031 (25 bp)
ACAGCTTGATTTCATTCTCTCTAAG
LOC_Os02g46350
Os.10552.1.S1_at--997--2791Chr02:28246985..28247009 (25 bp)
AAGTTCAACAACTCTGACGCTTTAG
LOC_Os02g46350
Os.10552.1.S1_at--332--10071Chr02:28246963..28246987 (25 bp)
TAGTGTTTTTGCTTGTTCTCCCGGA
LOC_Os02g46350
Os.10552.1.S1_at--1095--10531Chr02:28246948..28246972 (25 bp)
TTCTCCCGGATACAAGCGTGTTTTT
LOC_Os02g46350
Os.10552.1.S1_at--36--10471Chr02:28246870..28246894 (25 bp)
TTACGATTGTTATTTGTACCGCCCG
LOC_Os02g46350
Os.10552.1.S1_at--226--6991Chr02:28246855..28246879 (25 bp)
GTACCGCCCGTGTTTGTAAAATATG
LOC_Os02g46350
Os.10552.1.S1_at--853--8071Chr02:28246831..28246855 (25 bp)
GGACCACAAATCATGTAACCCAGTA
LOC_Os02g46350
Os.10552.1.S1_at--516--6931Chr02:28246809..28246833 (25 bp)
GTAGACTACTAGAAAGACACCAGGT
LOC_Os02g46350
Os.10552.1.S1_at--139--5471Chr02:28246775..28246799 (25 bp)
GAACTGTGCCCTTTTGATCTGGCGT
LOC_Os02g46350
Os.10552.1.S1_at--977--6971Chr02:28246720..28246744 (25 bp)
GTACCATCAGTTTGTCAGGTCAAGA
LOC_Os02g46350
Os.10552.1.S1_at--151--3491Chr02:28246687..28246711 (25 bp)
CATGGCATGGACTGGTACCTTTGTT
LOC_Os02g46350
Target Sequence 
ACAGCTTGATTTCATTCTCTCTAAGTTCAACAACTCTGACGCTTTAGTGTTTTTGCTTGTTCTCCCGGATACAAGCGTGT
TTTTTTGGGCAGAGTTTGGAGTATATGTAGTTTATTATTTTTGTAGTATATGTATTGTTACGATTGTTATTTGTACCGCC
CGTGTTTGTAAAATATGGACCACAAATCATGTAACCCAGTAGACTACTAGAAAGACACCAGGTTTCCCCCTCGAACTGTG
CCCTTTTGATCTGGCGTGGTGAGATTGGTGATTGGTACATTACATTTGTACCATCAGTTTGTCAGGTCAAGACAAATTAA
CATGGCATGGACTGGTACCTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis