Browse Element(s) Details


Os.106.1.S1_at

Description gb:AK099896.1
DB_XREF= gi:32985105
TID=Os.106.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113M11, full insert sequence.
FL= gb:AK109487.1 gb:AK099896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1609011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein
LOC_Os01g16080Os.16709.1.S1_at9/111+9054660..9057841expressed protein
LOC_Os01g16080Os.16709.2.S1_x_at9/111+9054660..9057841expressed protein
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.106.1.S1_at--1004--71Chr01:9062267..9062291 (25 bp)
ATTGCCAGGTGTAGCTGGTGGCCCA
LOC_Os01g16090
Os.106.1.S1_at--984--7571Chr01:9062224..9062248 (25 bp)
GGGCAGGCCTTGACAGCTATCCTTG
LOC_Os01g16090
Os.106.1.S1_at--365--1571Chr01:9062210..9062234 (25 bp)
AGCTATCCTTGCCTCCCAGGGTGGA
LOC_Os01g16090
Os.106.1.S1_at--492--8631Chr01:9062181..9062205 (25 bp)
TGGGTCTGAACAACATCCTGGGAGT
LOC_Os01g16090
Os.106.1.S1_at--53--2511Chr01:9062170..9062194 (25 bp)
AACATCCTGGGAGTTGGTGCAAATG
LOC_Os01g16090
Os.106.1.S1_at--55--5131Chr01:9062152..9062176 (25 bp)
GCAAATGGTTCAGGGTTGCCTAACC
LOC_Os01g16090
Os.106.1.S1_at--983--10051Chr01:9062105..9062129 (25 bp)
TAGTAGTGGTTTGCCTGGGATGCCT
LOC_Os01g16090
Os.106.1.S1_at--1005--6831Chr01:9060983..9061007 (25 bp)
GTTTCTGGCAAATCGATTACTCTAG
LOC_Os01g16090
Os.106.1.S1_at--798--10371Chr01:9060882..9060906 (25 bp)
TTTTCGAATGGCCATCAGGGCTTGT
LOC_Os01g16090
Os.106.1.S1_at--727--371Chr01:9060869..9060893 (25 bp)
ATCAGGGCTTGTGACCTTATTGTAA
LOC_Os01g16090
Os.106.1.S1_at--45--10391Chr01:9060778..9060802 (25 bp)
TTTTCAGCATAAGATCAGGTTACCT
LOC_Os01g16090
Target Sequence 
ATTGCCAGGTGTAGCTGGTGGCCCAGGGGTGAATCCTGCTCTGGGGCAGGCCTTGACAGCTATCCTTGCCTCCCAGGGTG
GAGGGTTGGGTCTGAACAACATCCTGGGAGTTGGTGCAAATGGTTCAGGGTTGCCTAACCCAGGGGCTTCTGCAGGACTG
GGTAGTAGTGGTTTGCCTGGGATGCCTGGTGCTGGTGGTTATTTGGGCGGCTATGGGGGTGGTGGTGGGTATGNCAGTAC
TCCACCAGGAGGCCCAGGAAGAAATTACATGGGTCATTAGGATGCTTATAACTATTTTACTGTGGCCAGATGATTCTACG
TGTTCCTGCTTCGCACTTATAAACTTGCTGTTTTAAGCTGTTTCTGGCAAATCGATTACTCTAGTGGTCAAAGTTTTCAC
AAGAACTTTGTTTCCTCAATCCTATCTTTCAAAATTAAGCAGTATGTACAACTATTTAGATTTTCGAATGGCCATCAGGG
CTTGTGACCTTATTGTAAAAGAGCTTGTGTGGATTTAAAGAACCATGGATCTTTTCTACATNGTTTTGGCTAAATAAGTG
CAGATTTTCAGCATAAGATCAGGTTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis