Browse Element(s) Details


Os.10616.1.S1_a_at

Description gb:AK064075.1
DB_XREF= gi:32974093
TID=Os.10616.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.8 (P0518C01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H12, full insert sequence.
FL= gb:AK101766.1 gb:AK064075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7397011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10616.1.S1_a_at--235--9591Chr01:43175876..43175900 (25 bp)
TCTTGATTTCGCTCTCAGAAGATGT
LOC_Os01g73970
Os.10616.1.S1_a_at--649--9651Chr01:43175783..43175886 (25 bp)
TCAGAAGATGTGTAGATCCTGCACA
LOC_Os01g73970
Os.10616.1.S1_a_at--526--9271Chr01:43175767..43175790 (24 bp)
TCCTGCACATGAGAAAATCGGTGTC
LOC_Os01g73970
Os.10616.1.S1_a_at--754--491Chr01:43175751..43175775 (25 bp)
ATCGGTGTCGTTGATTCCCAATGGA
LOC_Os01g73970
Os.10616.1.S1_a_at--183--6651Chr01:43175742..43175766 (25 bp)
GTTGATTCCCAATGGATTGTACATC
LOC_Os01g73970
Os.10616.1.S1_a_at--242--51Chr01:43175727..43175751 (25 bp)
ATTGTACATCAAGTGGTTCCTTCTC
LOC_Os01g73970
Os.10616.1.S1_a_at--722--371Chr01:43175720..43175744 (25 bp)
ATCAAGTGGTTCCTTCTCTTGGGAA
LOC_Os01g73970
Os.10616.1.S1_a_at--510--3131Chr01:43175443..43175467 (25 bp)
AATTTTCCAGACGAGAATTGCGGAG
LOC_Os01g73970
Os.10616.1.S1_a_at--106--3951Chr01:43175423..43175447 (25 bp)
CGGAGGCAGAGAAGTCATATTACGA
LOC_Os01g73970
Os.10616.1.S1_a_at--564--231Chr01:43175407..43175431 (25 bp)
ATATTACGAGATGATGGGCGTCCCC
LOC_Os01g73970
Os.10616.1.S1_a_at--341--11Chr01:43175380..43175404 (25 bp)
ACCAAACGTAACATTTGTCCACTAG
LOC_Os01g73970
Target Sequence 
TCTTGATTTCGCTCTCAGAAGATGTGTAGATCCTGCACATGAGAAAATCGGTGTCGTTGATTCCCAATGGATTGTACATC
AAGTGGTTCCTTCTCTTGGGAACCAGGGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGGTAAGGGAACGTTGTCGG
AAAGAATGGGGAATTTTCCAGACGAGAATTGCGGAGGCAGAGAAGTCATATTACGAGATGATGGGCGTCCCCCCACCAAA
CGTAACATTTGTCCACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10616.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis