Browse Element(s) Details


Os.10616.2.S1_x_at

Description gb:NM_189455.1
DB_XREF= gi:34905993
GEN=P0518C01.8
TID=Os.10616.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.8 (P0518C01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0518C01.8 (P0518C01.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7397011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10616.2.S1_x_at--30--1811Chr01:43176898..43176922 (25 bp)
ACCCTGATATCGTGGCATCTTATGA
LOC_Os01g73970
Os.10616.2.S1_x_at--306--5771Chr01:43176857..43176881 (25 bp)
GACGAGGATCTTGGAGTTGAGCATT
LOC_Os01g73970
Os.10616.2.S1_x_at--371--4831Chr01:43176715..43176739 (25 bp)
GCTAGAAATCTCACAACCTGGTTTA
LOC_Os01g73970
Os.10616.2.S1_x_at--463--6451Chr01:43176383..43176669 (25 bp)
GATCACCAGGTTCACAAGGAGACAG
LOC_Os01g73970
Os.10616.2.S1_x_at--651--5991Chr01:43176354..43176378 (25 bp)
GAGACCAGGCTGGTGCACTGACCCT
LOC_Os01g73970
Os.10616.2.S1_x_at--933--4351Chr01:43176249..43176347 (25 bp)
CCACCTTGTGCTGCCTTTGTTGAAA
LOC_Os01g73970
Os.10616.2.S1_x_at--1067--10231Chr01:43176234..43176258 (25 bp)
TTTGTTGAAATAATGGCCCCGGTGT
LOC_Os01g73970
Os.10616.2.S1_x_at--859--4531Chr01:43176219..43176243 (25 bp)
GCCCCGGTGTTCTCCAGAGATGCAT
LOC_Os01g73970
Os.10616.2.S1_x_at--1060--7691Chr01:43175879..43175903 (25 bp)
GGGTCTTGATTTCGCTCTCAGAAGA
LOC_Os01g73970
Os.10616.2.S1_x_at--753--491Chr01:43175751..43175775 (25 bp)
ATCGGTGTCGTTGATTCCCAATGGA
LOC_Os01g73970
Os.10616.2.S1_x_at--501--8751Chr01:43175725..43175749 (25 bp)
TGTACATCAAGTGGTTCCTTCTCTT
LOC_Os01g73970
Target Sequence 
ACCCTGATATCGTGGCATCTTATGAGTACATATTTATCTGGGACGAGGATCTTGGAGTTGAGCATTTTAACGCAGAGGAG
TACATTAAACTTGTCAAGAAATATCAGCTAGAAATCTCACAACCTGGTTTAGAGCCAGATCGGGGATTGACATGGCAGAT
GACCAAAAGAAGAGGGGATCACCAGGTTCACAAGGAGACAGAGGAGAGACCAGGCTGGTGCACTGACCCTCATCTTCCAC
CTTGTGCTGCCTTTGTTGAAATAATGGCCCCGGTGTTCTCCAGAGATGCATGGAGATGTGTATGGCATATGATTCAGAAT
GACTTGGTTCATGGATGGGGTCTTGATTTCGCTCTCAGAAGATGTGTAGATCCTGCACATGAGAAAATCGGTGTCGTTGA
TTCCCAATGGATTGTACATCAAGTGGTTCCTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10616.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis