Browse Element(s) Details


Os.10719.1.S1_at

Description gb:AK101449.1
DB_XREF= gi:32986658
TID=Os.10719.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039M15, full insert sequence.
FL= gb:AK101449.1 gb:AK106522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5846011/11Beta-catenin-like protein 1, putative, expressed
LOC_Os04g499301/11hypothetical protein
LOC_Os08g178301/11transposon protein, putative, unclassified
LOC_Os07g356601/11Protein kinase domain containing protein, expressed
LOC_Os05g438301/11Proline iminopeptidase, putative, expressed
LOC_Os09g378401/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450Os.33786.1.S1_at11/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450Os.17160.1.S1_s_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450OsAffx.13616.1.S1_x_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0016804molecular_functionprolyl aminopeptidase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10719.1.S1_at--245--8911Chr02:35742260..35742284 (25 bp)
TGAGCGCTACAATCGCAAGCTAGAA
LOC_Os02g58460
Os.10719.1.S1_at--773--4851Chr02:35742242..35742266 (25 bp)
GCTAGAAGCTGGTCTTTACACACTT
LOC_Os02g58460
Os.10719.1.S1_at--387--7591Chr02:35741987..35742105 (25 bp)
GGGCATATATGGCACTCTGGCAATT
LOC_Os02g58460
Os.10719.1.S1_at--38--451Chr02:35741602..35741626 (25 bp)
ATCTTTATCTTTGTGATGCGTACTC
LOC_Os02g58460
Os.10719.1.S1_at--342--9151Chr02:35741586..35741610 (25 bp)
TGCGTACTCTATTTTGCGTCATCAC
LOC_Os02g58460
Os.10719.1.S1_at--339--2651Chr02:35741539..35741563 (25 bp)
AACCAATGGTGTTGTAGCTCCTCTC
LOC_Os02g58460
Os.10719.1.S1_at--354--10011Chr02:35741525..35741549 (25 bp)
TAGCTCCTCTCATCTTGACAAGACG
LOC_Os02g58460
Os.10719.1.S1_at--196--671Chr02:35741488..35741512 (25 bp)
ATGACTTGTGCGTAGCGTTGGTTGC
LOC_Os02g58460
Os.10719.1.S1_at--486--10691Chr02:35741467..35741491 (25 bp)
TTGCGTTGCAGGGTATTCTTTTTGT
LOC_Os02g58460
Os.10719.1.S1_at--1078--97392Chr11:24844199..24844266 (25 bp)
TAATATAACTAGCTGGGTGGCCCGC
NONE
Os.10719.1.S1_at--819--4571Chr02:35741404..35741428 (25 bp)
GCGCGGCTAGCATTCATACATAATT
LOC_Os02g58460
Target Sequence 
TGAGCGCTACAATCGCAAGCTAGAAGCTGGTCTTTACACACTTCAGTTAATTGCACTTATTCTGGGGCATATATGGCACT
CTGGCAATTCACAGATGAGAACAAGAATAGAGTTGCTTCTAAGACAGAACAAACTGACTAAGGATGACGTTAAGGATATA
CTTGAGGAGTATCATGACAACATTGGAGATCTGGATGGGCCTGAAGAGAAGGAAAGAGCGCAAGGGCGGACAAAAGAGAT
CATAGCATCTTTATCTTTGTGATGCGTACTCTATTTTGCGTCATCACCAGTCCACCACCCTGTAACCAAAACCAATGGTG
TTGTAGCTCCTCTCATCTTGACAAGACGGACTATCATATGATGACTTGTGCGTAGCGTTGGTTGCGTTGCAGGGTATTCT
TTTTGTAAACTAGTAATATAACTAGCTGGGTGGCCCGCGCAATTGCGCGGCTAGCATTCATACATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis