Browse Element(s) Details


Os.10761.1.S1_at

Description gb:AK058710.1
DB_XREF= gi:32968728
TID=Os.10761.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D05, full insert sequence.
FL= gb:AK058710.1 gb:AK101724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1774011/11plastidic phosphate translocator-like protein2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10761.1.S1_at--656--4951Chr03:9853735..9853759 (25 bp)
GCATACTAGTGCATTGACTCTACAG
LOC_Os03g17740
Os.10761.1.S1_at--1061--9511Chr03:9855063..9855083 (21 bp)
TCTACAGGTCCTAGGTAACGCGAAA
LOC_Os03g17740
Os.10761.1.S1_at--1--5271Chr03:9855142..9855166 (25 bp)
GAATGCTCGGTTACACTCTTACAGT
LOC_Os03g17740
Os.10761.1.S1_at--16--1851Chr03:9855200..9855224 (25 bp)
ACGCAACAAGCCCTGAATATTTTAG
LOC_Os03g17740
Os.10761.1.S1_at--766--9171Chr03:9855227..9855251 (25 bp)
TGCCGTAAATATGGCTGTCCTTTCT
LOC_Os03g17740
Os.10761.1.S1_at--59--3031Chr03:9855314..9855338 (25 bp)
AATCCTGCACTGTATGGAGCCTGAT
LOC_Os03g17740
Os.10761.1.S1_at--1105--9851Chr03:9855366..9855390 (25 bp)
TACATGTAGTTTGCCCATGGGATCT
LOC_Os03g17740
Os.10761.1.S1_at--456--10331Chr03:9855446..9855470 (25 bp)
TTTAGAGAACTGTGGCTCACGTTGC
LOC_Os03g17740
Os.10761.1.S1_at--485--8311Chr03:9855459..9855483 (25 bp)
GGCTCACGTTGCCAACATTGGTTAA
LOC_Os03g17740
Os.10761.1.S1_at--786--6851Chr03:9855505..9855529 (25 bp)
GTTTGAGTCATTCATCGGTTATTGT
LOC_Os03g17740
Os.10761.1.S1_at--455--1251Chr03:9855564..9855588 (25 bp)
AGATTGCCTGTACCAAACTTTGCTC
LOC_Os03g17740
Target Sequence 
GCATACTAGTGCATTGACTCTACAGGTCCTAGGTAACGCGAAAGGTGCTGTGGCAGTTGTTGTCTCAATTCTAATATTCA
GGAATCCCGTATCTNGTAACCGGAATGCTCGGTTACACTCTTACAGTTATAGGCGTAATTCTTTACAGTGAATCCAAANA
AACGCAACAAGCCCTGAATATTTTAGAATGCCGTAAATATGGCTGTCCTTTCTCATTCCGGTGGATGCCCAGGGCTAATA
TATGACGGGGAACTACATCGGGGACAATTGCAACAAATCCTGCACTGTATGGAGCCTGATTGGATAGCAAGGATAGAAGT
CCAATAATACATGTAGTTTGCCCATGGGATCTGGGAGGCATTTTGTTTTGCTAATGGAAATGATCAATAGAATATATTTT
TTTTTGTGTTTAGAGAACTGTGGCTCACGTTGCCAACATTGGTTAATACGGTTAGTTCGTGGAAATTGTTTGAGTCATTC
ATCGGTTATTGTAAGTTCATGTTCCCCCATTTTGTTTTTTCTCTGAAGATTGCCTGTACCAAACTTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis