Browse Element(s) Details


Os.10820.1.S1_at

Description gb:AK101318.1
DB_XREF= gi:32986527
TID=Os.10820.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transmembrane protein (OSJNBa0040D23.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034D12, full insert sequence.
FL= gb:AK061395.1 gb:AK101318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3922010/11tobamovirus multiplication protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein
LOC_Os10g39200Os.6652.1.S1_x_at11/1110+20599934..20604898expressed protein
LOC_Os10g39210OsAffx.7941.1.S1_x_at11/1110+20605434..20606105copper chaperone, putative
LOC_Os10g39220Os.10820.1.S1_at10/1110+20606875..20610738tobamovirus multiplication protein 3, putative, expressed
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0046790molecular_functionvirion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10820.1.S1_at--725--3471Chr10:20609130..20609153 (24 bp)
CAGGTGTATCACTGTTTGCGGCTTT
LOC_Os10g39220
Os.10820.1.S1_at--786--9131Chr10:20609145..20609169 (25 bp)
TGCGGCTTTTGGGTTTCTTCTCTAC
LOC_Os10g39220
Os.10820.1.S1_at--975--6271Chr10:20609672..20609696 (25 bp)
GATGTTGCAACGTTTCCCAGTTGAA
LOC_Os10g39220
Os.10820.1.S1_at--434--8311Chr10:20609814..20609838 (25 bp)
GGCTATGTGACTACAATCTGCTTTA
LOC_Os10g39220
Os.10820.1.S1_at--157--3411NONE
CAGATGTGTCATGATGTGTCTCAAC
NONE
Os.10820.1.S1_at--1110--8791Chr10:20609991..20610015 (25 bp)
TGTTCTGAACCATCCGATTCTGAAT
LOC_Os10g39220
Os.10820.1.S1_at--553--10471Chr10:20610024..20610431 (25 bp)
TTACTTGCTGGTTGAGATCGTACCT
LOC_Os10g39220
Os.10820.1.S1_at--121--3151Chr10:20610497..20610521 (25 bp)
AATTCATTAGAGCAGCCCTGGCAGG
LOC_Os10g39220
Os.10820.1.S1_at--430--2811Chr10:20610585..20610609 (25 bp)
AAGATACCACACTTGCTTTCGAGCT
LOC_Os10g39220
Os.10820.1.S1_at--102--4931Chr10:20610607..20610631 (25 bp)
GCTTGCCCCAGCTTTTGTAAGAGGA
LOC_Os10g39220
Os.10820.1.S1_at--426--5251Chr10:20610640..20610664 (25 bp)
GAATCTCAGGGTACCATCGTGTGTA
LOC_Os10g39220
Target Sequence 
CAGGTGTATCACTGTTTGCGGCTTTTGGGTTTCTTCTCTACGGTGGGAGGTTATTCCTGATGTTGCAACGTTTCCCAGTT
GAATCGAAAGGACGGCGCAAGAAATTGCAGGAGGTTGGCTATGTGACTACAATCTGCTTTACTTGTTTCTTGATCAGATG
TGTCATGATGTGTCTCAACNCATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATT
ACTTGCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAA
TATCATCCAATTCATTAGAGCAGCCCTGGCAGGGACAGAAGAGGTTTTCTTATGAGTAGTCTATACAGCGTGGTAAATAC
AGAAAAGGCAATGTGAAAGATACCACACTTGCTTTCGAGCTTGCCCCAGCTTTTGTAAGAGGAAGCCTTTAGAATCTCAG
GGTACCATCGTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis