Browse Element(s) Details


Os.10821.1.S1_at

Description gb:AK060910.1
DB_XREF= gi:32970928
TID=Os.10821.1
CNT=69
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F10, full insert sequence.
FL= gb:AK099182.1 gb:AK104653.1 gb:AK060910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0960011/11Vesicle-associated membrane protein 724, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09580Os.13645.1.S1_at7/117+5069371..5075921aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os07g09590NANA7+5080419..5083090bHLH transcription factor, putative
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10821.1.S1_at--856--1271Chr07:5097323..5097347 (25 bp)
AGATCAAGCTGATCGTCCTGGGCAT
LOC_Os07g09600
Os.10821.1.S1_at--143--8691Chr07:5097383..5097407 (25 bp)
TGTGCCATGGCTTCAAGTGCAAGTG
LOC_Os07g09600
Os.10821.1.S1_at--355--8791Chr07:5097502..5097526 (25 bp)
TGTTAGTCATGAGTCCTGCCCCGAT
LOC_Os07g09600
Os.10821.1.S1_at--578--6571Chr07:5097524..5097548 (25 bp)
GATTCTTGGGTGTTCGAGTGTCCCT
LOC_Os07g09600
Os.10821.1.S1_at--991--6111Chr07:5097539..5097563 (25 bp)
GAGTGTCCCTGATGTCGCGCTTGAT
LOC_Os07g09600
Os.10821.1.S1_at--87--10431Chr07:5097586..5097610 (25 bp)
TTATGGGTCGGAGTCCCGTGTATTT
LOC_Os07g09600
Os.10821.1.S1_at--842--7431Chr07:5097603..5097627 (25 bp)
GTGTATTTTTGGACGCTATTCATGT
LOC_Os07g09600
Os.10821.1.S1_at--317--751Chr07:5097624..5097648 (25 bp)
ATGTATAGCCTGTATGCTACCCTCT
LOC_Os07g09600
Os.10821.1.S1_at--1121--3751Chr07:5097645..5097669 (25 bp)
CTCTTTTCGCTCTGCTATATGAGTA
LOC_Os07g09600
Os.10821.1.S1_at--126--2051Chr07:5097696..5097720 (25 bp)
ACTTTATATCTTCTCTTACTCCACA
LOC_Os07g09600
Os.10821.1.S1_at--993--8152Chr07:5097739..5097763 (25 bp)
GGAACAACTTGCATTTTCAAACCTG
LOC_Os07g09600
Target Sequence 
AGATCAAGCTGATCGTCCTGGGCATCATCATCGCGCTCATCCTCATCATCATCCTGTCCGTGTGCCATGGCTTCAAGTGC
AAGTGAGGGTGTTGGCTTCCCAGTCCTCCACATTCACCTTGCCCCCCATAATACCGCCTATTCCTGGCGAAAAAAAANGA
CCATATGTTTTTTTTTGTTCTGTTAGTCATGAGTCCTGCCCCGATTCTTGGGTGTTCGAGTGTCCCTGATGTCGCGCTTG
ATTGGTGTCGGATAGTGACTGGGTTTATGGGTCGGAGTCCCGTGTATTTTTGGACGCTATTCATGTATAGCCTGTATGCT
ACCCTCTTTTCGCTCTGCTATATGAGTAGTAGGTGTTACTACGTTTGTTCCCCCACTTTATATCTTCTCTTACTCCACAG
CTAAATCTTAGTAAGAAGGAACAACTTGCATTTTCAAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis