Browse Element(s) Details


Os.10830.1.S1_at

Description gb:AK099291.1
DB_XREF= gi:32984500
TID=Os.10830.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127C06, full insert sequence.
FL= gb:AK099291.1 gb:AK072041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4132010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41290OsAffx.17454.1.S1_s_at11/118+25953710..25954892auxin-responsive protein, putative, expressed
LOC_Os08g41300OsAffx.27508.111.S1_s_at10/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.8861.1.S1_x_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.53621.1.S1_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41310OsAffx.29616.1.S1_at11/118+25962701..25963716hypothetical protein
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed
LOC_Os08g41350OsAffx.28933.2.S1_x_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.2.S1_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.1.S1_x_at4/118+25991752..25992455hypothetical protein
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10830.1.S1_at--96--10511Chr08:25971750..25971774 (25 bp)
TTCAAGATGGAACAGCCGGCGCAAA
LOC_Os08g41320
Os.10830.1.S1_at--910--811NONE
ATGGTCAGCTGCAAGCAGGCCACAT
NONE
Os.10830.1.S1_at--127--2971Chr08:25972092..25972116 (25 bp)
AATGGAGTTCTAACCTGCTTAGGCC
LOC_Os08g41320
Os.10830.1.S1_at--961--9051Chr08:25972107..25972131 (25 bp)
TGCTTAGGCCACACTGATCAAGGAA
LOC_Os08g41320
Os.10830.1.S1_at--637--1391Chr08:25972159..25972183 (25 bp)
AGACCCAAGTGCAAAACTCCCATTG
LOC_Os08g41320
Os.10830.1.S1_at--988--7351Chr08:25972193..25972217 (25 bp)
GTGAAGCTCTCTGAACTCTTGAAGC
LOC_Os08g41320
Os.10830.1.S1_at--535--2491Chr08:25972219..25972243 (25 bp)
AACAGTCATCATTAGGCTCTTAAGA
LOC_Os08g41320
Os.10830.1.S1_at--662--3651Chr08:25972254..25972278 (25 bp)
CTTAATCATAGTCTGCCTGTAGGGC
LOC_Os08g41320
Os.10830.1.S1_at--1030--4471Chr08:25972268..25972292 (25 bp)
GCCTGTAGGGCGATGTGATTCTTTT
LOC_Os08g41320
Os.10830.1.S1_at--968--6511Chr08:25972376..25972400 (25 bp)
GATATTACAAAGCACCCTCTTCTTC
LOC_Os08g41320
Os.10830.1.S1_at--1081--6871Chr08:25972459..25972483 (25 bp)
GTATTACCACTGTTGCATTTTGTCT
LOC_Os08g41320
Target Sequence 
TTCAAGATGGAACAGCCGGCGCAAACTTGCAGCAAAGGAACTTCTGGGAGGATGATCTCCAAAGTGTTTTCCATATTGAG
AATGGACAGACCCAGGAGAATGGGGTTTCAGCACCAAACTTCCATGGTCAGCTGCAAGCAGGCCACATGAAAATGGAGTT
CTAACCTGCTTAGGCCACACTGATCAAGGAAAAGAATGACAATCTGTACATAGGGAAGAGACCCAAGTGCAAAACTCCCA
TTGGCAAAGCTAGTGAAGCTCTCTGAACTCTTGAAGCTAACAGTCATCATTAGGCTCTTAAGAGAGGATATTTCTTAATC
ATAGTCTGCCTGTAGGGCGATGTGATTCTTTTGGTACCTACTATTTGAGATGATTATATTTTGATATAACCGTAACAAAT
TAAAATAGTTAATTTGTGTATAAAGATATGGTGCAGATATTACAAAGCACCCTCTTCTTCTTCTTTCTGATTATGTATGA
GCTGGCCAANTAGNAGCTAGCTGGATGGATGGAACCATGTATTACCACTGTTGCATTTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis