Browse Element(s) Details


Os.10835.1.S1_at

Description gb:AK071717.1
DB_XREF= gi:32981740
TID=Os.10835.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109O07, full insert sequence.
FL= gb:AK071717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1589011/11helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15840OsAffx.18229.1.S1_x_at1/115+8917883..8922376retrotransposon protein, putative, unclassified
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15890Os.10835.1.S1_at11/115+8945423..8952609helicase, putative, expressed
LOC_Os05g15900OsAffx.4351.1.S1_at11/115+8953030..8953676hypothetical protein
LOC_Os05g15910OsAffx.14715.1.S1_at10/115+8954254..8956660hypothetical protein
LOC_Os05g15920NANA5+8961095..8962226Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15930OsAffx.14716.1.S1_at11/115+8963427..8969481transposon protein, putative, unclassified, expressed
LOC_Os05g15940OsAffx.18662.1.S1_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15940Os.38751.1.A1_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15940OsAffx.27810.1.S1_x_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009910biological_processnegative regulation of flower development
GO:0048441biological_processpetal development
GO:0048451biological_processpetal formation
GO:0016514cellular_componentSWI/SNF complex
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10835.1.S1_at--608--1171Chr05:8945988..8946012 (25 bp)
AGTATTGGACCGCTACAGGAATGCA
LOC_Os05g15890
Os.10835.1.S1_at--1029--8031Chr05:8945950..8945974 (25 bp)
GGAGTATGGATAATGCTTCCCTCAT
LOC_Os05g15890
Os.10835.1.S1_at--760--4911Chr05:8945936..8945960 (25 bp)
GCTTCCCTCATATAGATAGCCCTTT
LOC_Os05g15890
Os.10835.1.S1_at--915--3911Chr05:8945855..8945879 (25 bp)
CTGGCTTGGCACAGGCTATCAGAAG
LOC_Os05g15890
Os.10835.1.S1_at--843--8951Chr05:8945723..8945747 (25 bp)
TGACATAAATCGCTGTTTCTCCTGC
LOC_Os05g15890
Os.10835.1.S1_at--1071--7891Chr05:8945697..8945721 (25 bp)
GGTTCTCTGGATTTGGGCGCTTGTA
LOC_Os05g15890
Os.10835.1.S1_at--976--6891Chr05:8945675..8945699 (25 bp)
GTATCTTTGTTGGTCGGCTGAGTAA
LOC_Os05g15890
Os.10835.1.S1_at--639--5131Chr05:8945537..8945561 (25 bp)
GCAAATAATTCACCCGTTATCCGAC
LOC_Os05g15890
Os.10835.1.S1_at--406--10151Chr05:8945520..8945544 (25 bp)
TATCCGACTTTTCCCGAGACATAAT
LOC_Os05g15890
Os.10835.1.S1_at--39--2171Chr05:8945473..8945497 (25 bp)
ACACCAAGGTCTGGCGTTGTGGCAA
LOC_Os05g15890
Os.10835.1.S1_at--726--7331Chr05:8945434..8945458 (25 bp)
GTGCAGGCTGTTAATACATCCCTTG
LOC_Os05g15890
Target Sequence 
AGTATTGGACCGCTACAGGAATGCAAAGTAAGCCATAGGGAGTATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCT
GCTCCACCGATGTTTTCCTTCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGG
GAGGAACATTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTTGTAAGGTAAGATCAGA
CCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTCTCCTGCTGGTTCTCTGGATTTGGGCGCTTGTATCTT
TGTTGGTCGGCTGAGTAAAGCTTTTAGAGTTACCNCGGNNNNNNNNNNNNNNNNNNNNCAGAAAGAAGCTGTGCTGGTTA
GTGGTTACAATGTACAAATGATACGAGCATAGCAGGTCATGTATCATGCATGCAAATAATTCACCCGTTATCCGACTTTT
CCCGAGACATAATATTGTAGCTGATCGCCAGCGGCACACCAAGGTCTGGCGTTGTGGCAATGTTGTAACAGAGAGTGCAG
GCTGTTAATACATCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis