Browse Element(s) Details


Os.10845.1.S1_s_at

Description gb:AK064366.1
DB_XREF= gi:32974384
TID=Os.10845.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C03, full insert sequence.
FL= gb:AK064366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6037011/11histidine acid phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10845.1.S1_s_at--344--5711Chr03:34278514..34278538 (25 bp)
GACTACGACGCCCTATGCAAGATAA
LOC_Os03g60370
Os.10845.1.S1_s_at--848--7971Chr03:34278578..34278602 (25 bp)
GGATGTCCAATTTCTTCCTAGGTTT
LOC_Os03g60370
Os.10845.1.S1_s_at--1112--9571Chr03:34278590..34278614 (25 bp)
TCTTCCTAGGTTTGTTCTCGCAGAA
LOC_Os03g60370
Os.10845.1.S1_s_at--860--6471Chr03:34278617..34278641 (25 bp)
GATACCGTGTTAGTGCTCAGGATGT
LOC_Os03g60370
Os.10845.1.S1_s_at--810--1311Chr03:34278671..34278695 (25 bp)
AGATGGTGCATCTTCTACCTTTCGC
LOC_Os03g60370
Os.10845.1.S1_s_at--808--9791Chr03:34278698..34278722 (25 bp)
TAAGCTGCTACTATCCATCTACCAT
LOC_Os03g60370
Os.10845.1.S1_s_at--1081--2011Chr03:34278753..34278777 (25 bp)
ACTACGGTGTTTCTGTACTTGCAAC
LOC_Os03g60370
Os.10845.1.S1_s_at--791--6991Chr03:34278767..34278791 (25 bp)
GTACTTGCAACCCTCAGTTTGATGA
LOC_Os03g60370
Os.10845.1.S1_s_at--386--7051Chr03:34278805..34278829 (25 bp)
GTAACAACACGCTATCACTGGTGCC
LOC_Os03g60370
Os.10845.1.S1_s_at--863--3051Chr03:34278880..34278904 (25 bp)
AATCTGGACTTTCTCTAGTGCTCAA
LOC_Os03g60370
Os.10845.1.S1_s_at--68--10871Chr03:34278993..34279017 (25 bp)
TTGGACAATCCGTTTCAAGCTTTCA
LOC_Os03g60370
Target Sequence 
GACTACGACGCCCTATGCAAGATAAGGCCGGTGGCAAGAGAGGAGCCTTCCTCCTTCAGTTCCAGGATGTCCAATTTCTT
CCTAGGTTTGTTCTCGCAGAAAGGATACCGTGTTAGTGCTCAGGATGTGAAGTCGGAGCTGTAGGTTTATACTAGGCAGA
TGGTGCATCTTCTACCTTTCGCACTAAGCTGCTACTATCCATCTACCATGGATAACCAAGGGACTGACTCGTGGACTAAA
CTACGGTGTTTCTGTACTTGCAACCCTCAGTTTGATGAGCGAGTCCAATGTGTAACAACACGCTATCACTGGTGCCCCTC
TTNTTTCAGANTAGAAGACGTTTGTTGATCAANTGTAATCTTTGTTTTAATCTGGACTTTCTCTAGTGCTCAACTGCTGA
CTCTGTTGAGATCAAACTGAAAGTACTAGCACACGGTTGTGATTGTGGCCCTTGTGGTAGGTTGAGATCATGTACTACTA
CTTGGACAATCCGTTTCAAGCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10845.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis