Browse Element(s) Details


Os.10847.1.A1_at

Description gb:CB679764
DB_XREF= gi:29683489
DB_XREF=OSJNEf03K15.r
CLONE=OSJNEf03K15
TID=Os.10847.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10847 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565365.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0920010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein
LOC_Os10g09210NANA10+4743050..4743730transposon protein, putative, unclassified
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10847.1.A1_at--883--8531NONE
TGGAGCCGTGGAGGCTGAAGCTGTC
NONE
Os.10847.1.A1_at--989--5391Chr10:4733984..4734008 (25 bp)
GAAGCTGTCTCATCAGGAGAATCCT
LOC_Os10g09200
Os.10847.1.A1_at--365--8971Chr10:4734009..4734033 (25 bp)
TGAAACTAAGTCCAGAGGAGCGGCT
LOC_Os10g09200
Os.10847.1.A1_at--1113--2531Chr10:4734012..4734036 (25 bp)
AACTAAGTCCAGAGGAGCGGCTGCA
LOC_Os10g09200
Os.10847.1.A1_at--793--2011Chr10:4734013..4734037 (25 bp)
ACTAAGTCCAGAGGAGCGGCTGCAG
LOC_Os10g09200
Os.10847.1.A1_at--294--1631Chr10:4734027..4734051 (25 bp)
AGCGGCTGCAGGACCAGAGAAAGTA
LOC_Os10g09200
Os.10847.1.A1_at--681--3831Chr10:4734032..4734056 (25 bp)
CTGCAGGACCAGAGAAAGTAACCAT
LOC_Os10g09200
Os.10847.1.A1_at--561--5011Chr10:4734034..4734058 (25 bp)
GCAGGACCAGAGAAAGTAACCATAT
LOC_Os10g09200
Os.10847.1.A1_at--862--8091Chr10:4734037..4734061 (25 bp)
GGACCAGAGAAAGTAACCATATATC
LOC_Os10g09200
Os.10847.1.A1_at--880--3411Chr10:4734041..4734065 (25 bp)
CAGAGAAAGTAACCATATATCAGCC
LOC_Os10g09200
Os.10847.1.A1_at--730--3751Chr10:4734067..4734387 (25 bp)
CTCTAAAATCATGGCGACAAGGGTT
LOC_Os10g09200
Target Sequence 
TGGAGCCGTGGAGGCTGAAGCTGTCTCATCAGGAGAATCCTTGAAACTAAGTCCAGAGGAGCGGCTGCAGGACCAGAGAA
AGTAACCATATATCAGCCNCTCTAAAATCATGGCGACAAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10847.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis