Browse Element(s) Details


Os.10854.2.S1_x_at

Description gb:NM_197269.1
DB_XREF= gi:37535897
TID=Os.10854.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10854 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DnaJ domain containing protein (OSJNBb0015K05.11), mRNA.
PROD=putative DnaJ domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3637011/11Chaperone protein dnaJ 13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36390OsAffx.30689.1.S1_at9/1110+19120091..19124912multi-copper oxidase type I family protein, putative
LOC_Os10g36400Os.10475.1.A1_at11/1110+19132688..19134422expressed protein
LOC_Os10g36410OsAffx.20214.1.S1_at8/1110+19134449..19138640hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10854.2.S1_x_at--90--4071Chr10:19103856..19103880 (25 bp)
CGAGTTGCATCGTGCTGGTCAAAAA
LOC_Os10g36370
Os.10854.2.S1_x_at--82--10451Chr10:19103621..19103855 (25 bp)
TTAGTTATCCCAGTTTTGCTTTCAA
LOC_Os10g36370
Os.10854.2.S1_x_at--972--631Chr10:19103587..19103611 (25 bp)
ATGCATTACTTGCTACCAGCGTTTT
LOC_Os10g36370
Os.10854.2.S1_x_at--743--1611Chr10:19103570..19103594 (25 bp)
AGCGTTTTTGCTATTCCTTCAACAC
LOC_Os10g36370
Os.10854.2.S1_x_at--549--2351Chr10:19103341..19103365 (25 bp)
AAAGCCATACTGTCTTAAGCGGGAA
LOC_Os10g36370
Os.10854.2.S1_x_at--782--8511Chr10:19103299..19103318 (20 bp)
TGGAAAGTTTGTCTTCACAGCTAAC
LOC_Os10g36370
Os.10854.2.S1_x_at--1061--6871Chr10:19102495..19102519 (25 bp)
GTATTAGACGTGACCATCCCACTGA
LOC_Os10g36370
Os.10854.2.S1_x_at--1007--8971Chr10:19102473..19102497 (25 bp)
TGAACTTCCTCGTCTCTGAGGCAGG
LOC_Os10g36370
Os.10854.2.S1_x_at--754--6191Chr10:19102115..19102480 (25 bp)
GAGGCAGGCCAGCTAAAGCTTCATG
LOC_Os10g36370
Os.10854.2.S1_x_at--243--3091Chr10:19102071..19102095 (25 bp)
AATAATGGGCTTCTACGATCCTTGC
LOC_Os10g36370
Os.10854.2.S1_x_at--716--10691Chr10:19102050..19102074 (25 bp)
TTGCCCTGGTGATCCAAAGCTGTTA
LOC_Os10g36370
Target Sequence 
CGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCG
TTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAG
AAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCACAAAAGTTACT
AGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATC
GCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCA
CTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGA
TCCTTGCCCTGGTGATCCAAAGCTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10854.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis