Browse Element(s) Details


Os.10891.1.S1_at

Description gb:AK120113.1
DB_XREF= gi:37989736
TID=Os.10891.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025E12, full insert sequence.
FL= gb:AK060718.1 gb:AK120113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g114102/11Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein
LOC_Os03g11440Os.28148.1.S1_at11/113+5875150..5878645Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0005759cellular_componentmitochondrial matrix
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10891.1.S1_at--434--2551Chr03:5853715..5853739 (25 bp)
AACTGACGTGGCTTACTTGAGTTGC
LOC_Os03g11410
Os.10891.1.S1_at--924--6831Chr03:5853748..5853772 (25 bp)
GTTTCTACGATGAATCGTTACCCCT
LOC_Os03g11410
Os.10891.1.S1_at--650--6231NONE
GATGGCGTTCCAAAGGTGTGGAAAC
NONE
Os.10891.1.S1_at--996--2251NONE
AAATATCGCGATAGATTTGGTACAA
NONE
Os.10891.1.S1_at--985--7851NONE
GGTATTTTTTACGATATGGCCGAAT
NONE
Os.10891.1.S1_at--661--10071NONE
TATGGCCGAATTGGGAAGTCCTTAT
NONE
Os.10891.1.S1_at--994--3951NONE
CGGATAGTTACGTTGTCGCTGTGGA
NONE
Os.10891.1.S1_at--693--9931NONE
TACGTTGTCGCTGTGGAAAGTCCAT
NONE
Os.10891.1.S1_at--684--2471NONE
AACACCAATTTGTGGAGCAAGAAAT
NONE
Os.10891.1.S1_at--733--9771NONE
TAAGGCGGTTATTTAGGACGTGTGA
NONE
Os.10891.1.S1_at--729--6051NONE
GAGTTGTGGTACGACAGCTTGTATT
NONE
Target Sequence 
AACTGACGTGGCTTACTTGAGTTGCCACCCNGTTGTTTCTACGATGAATCGTTACCCCTANTTATCCTTTTTTTTATTGC
NAAGATTGCTTTCTTTTTCTTGGAATAATTTGATGAAGCTGCTTATGTAAAGATGATAGTTTTGCTGTGTCGACTATNGA
CAACTGCACNGAGGTGCGAATTGTACCGATCTNTNAANNNNNNANNNNNNCTNGNNGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAGGATGGCGTTCCAAAGGTGTGGAAACT
GTGTGGTGATGTGGAATGTTGGCGGTGGAATATGGTGGAAATATCGCGATAGATTTGGTACAATAGGGTATTTTTTACGA
TATGGCCGAATTGGGAAGTCCTTATAGTAAAGAATAACGGATAGTTACGTTGTCGCTGTGGAAAGTCCATATGAGGGGTA
GCGAAGAGGAAGATATTTAGTGCAGGCAAAAAACACCAATTTGTGGAGCAAGAAATGTAAGGCGGTTATTTAGGACGTGT
GAAAGAAGAGTTGTGGTACGACAGCTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis