Browse Element(s) Details


Os.10960.1.S1_at

Description gb:AK058687.1
DB_XREF= gi:32968705
TID=Os.10960.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A11, full insert sequence.
FL= gb:AK061532.1 gb:AK058687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3967011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10960.1.S1_at--189--8211Chr09:22764200..22764224 (25 bp)
GGAAGGCATCCGCTTTGCCAAGATA
LOC_Os09g39670
Os.10960.1.S1_at--245--9811Chr09:22765138..22765162 (25 bp)
TAACTGCAAATTCTCTTCATCCTGG
LOC_Os09g39670
Os.10960.1.S1_at--265--8571Chr09:22765160..22765184 (25 bp)
TGGATCTATCATCACGAACCTTCTT
LOC_Os09g39670
Os.10960.1.S1_at--261--10631Chr09:22765183..22765206 (24 bp)
TTCGTCACCACAGTATCCTAGATGT
LOC_Os09g39670
Os.10960.1.S1_at--333--6291Chr09:22765552..22765573 (22 bp)
GATGTTCTCCATCGGACACTTGGTA
LOC_Os09g39670
Os.10960.1.S1_at--380--8451Chr09:22766136..22766160 (25 bp)
GGCCACCACTTGTTATGTTGCATTG
LOC_Os09g39670
Os.10960.1.S1_at--592--3971Chr09:22766184..22766208 (25 bp)
CGGGAAGTACTTCAGTGACAGCAAT
LOC_Os09g39670
Os.10960.1.S1_at--675--7651Chr09:22766261..22766285 (25 bp)
GGGAGTACAGCATCGAGCTCATCAC
LOC_Os09g39670
Os.10960.1.S1_at--634--2531Chr09:22766380..22766404 (25 bp)
AACTATGGCAGCTACCATCTGGTGT
LOC_Os09g39670
Os.10960.1.S1_at--852--1711Chr09:22766393..22766417 (25 bp)
ACCATCTGGTGTGCGTGCGTACGTA
LOC_Os09g39670
Os.10960.1.S1_at--1007--7271Chr09:22766407..22766431 (25 bp)
GTGCGTACGTACATCAAACCAACAT
LOC_Os09g39670
Target Sequence 
GGAAGGCATCCGCTTTGCCAAGATAAATGACGAGTCGGAGTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAA
ACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGA
TCTATCATCACGAACCTTCTTCGTCACCACAGTATCCTAGATGTTCTCCATCGGACACTTGGTAAATTGGTGCTTAAAAA
TGCTCAGCAGGGGGCGGCCACCACTTGTTATGTTGCATTGCACCCACAGGTGAAGGGTGTGTCCGGGAAGTACTTCAGTG
ACAGCAATGTGAACGAGGCGAGTGAGAAAGGCAATGACATGGAGCTGGCCAAGAGGCTGTGGGAGTACAGCATCGAGCTC
ATCACCTGACCTGACCTGACCTGATTCATGAACTGAATGAGAGATACTATGTAATGTTGAAGTTTGAGAGAGTGCCTGTA
AAGTAAATTGTGGTAACTTAACTATGGCAGCTACCATCTGGTGTGCGTGCGTACGTACATCAAACCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis