Browse Element(s) Details


Os.10984.1.S1_at

Description gb:AK112012.1
DB_XREF= gi:37988675
TID=Os.10984.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (P0487E11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H07, full insert sequence.
FL= gb:AK112012.1 gb:AK103351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2362011/11GTP-binding protein SAR1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23590Os.16549.1.S1_at9/111+13237130..13244709expressed protein
LOC_Os01g23590Os.37090.1.S1_x_at1/111+13237130..13244709expressed protein
LOC_Os01g23600Os.49392.1.S2_at11/111+13247411..13249150expressed protein
LOC_Os01g23610Os.20630.1.S1_at9/111+13255095..13264539Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0048221biological_processrough ER to cis-Golgi vesicle-mediated transport
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005783cellular_componentendoplasmic reticulum
GO:0005829cellular_componentcytosol
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10984.1.S1_at--491--1551Chr01:13270370..13270394 (25 bp)
AGCTTGATGCACTCCTATCTGATGA
LOC_Os01g23620
Os.10984.1.S1_at--879--9271Chr01:13270409..13270433 (25 bp)
TCCCGTTTCTTATCCTTGGCAACAA
LOC_Os01g23620
Os.10984.1.S1_at--1--5691Chr01:13270438..13270462 (25 bp)
GACATTCCATATGCTGCTTCTGAAG
LOC_Os01g23620
Os.10984.1.S1_at--98--5891Chr01:13270465..13270489 (25 bp)
GAGCTGCGGTATCATCTAGGCCTTA
LOC_Os01g23620
Os.10984.1.S1_at--1069--10071Chr01:13270481..13270505 (25 bp)
TAGGCCTTAGCAACTTCACAACTGG
LOC_Os01g23620
Os.10984.1.S1_at--1074--5171Chr01:13270511..13270535 (25 bp)
GCAAGGTCAGCCTAGGTGAATCCAA
LOC_Os01g23620
Os.10984.1.S1_at--452--8411Chr01:13270541..13270565 (25 bp)
GGCCCCTCGAAGTGTTCATGTGCAG
LOC_Os01g23620
Os.10984.1.S1_at--993--2751Chr01:13270637..13270661 (25 bp)
AAGACATACTTGCATACTCTGCCCA
LOC_Os01g23620
Os.10984.1.S1_at--782--4311Chr01:13270674..13270698 (25 bp)
CCTTCTCGTTTGTTTCAGTTGGTTG
LOC_Os01g23620
Os.10984.1.S1_at--206--10211Chr01:13270831..13270855 (25 bp)
TTTGCTTTTCCATAGGGCGTTTACT
LOC_Os01g23620
Os.10984.1.S1_at--325--7931Chr01:13270916..13270940 (25 bp)
GGATTGCTGCATGATGTGTTCCCAT
LOC_Os01g23620
Target Sequence 
AGCTTGATGCACTCCTATCTGATGATTCATTGGCAGCTGTCCCGTTTCTTATCCTTGGCAACAAGATTGACATTCCATAT
GCTGCTTCTGAAGAGGAGCTGCGGTATCATCTAGGCCTTAGCAACTTCACAACTGGGAAGGGCAAGGTCAGCCTAGGTGA
ATCCAATGTCCGGCCCCTCGAAGTGTTCATGTGCAGTGTTGTCCGCAAGATGGGCTATGGTGACGGGTTCAAGTGGGTCT
CCCAGTACATCAAGTAGATCCCTTGTCAAGACATACTTGCATACTCTGCCCAGCGATTTTTTNTTCCTTCTCGTTTGTTT
CAGTTGGTTGTTCTTCACGACAACAATCATCATGACGGTATGGAGGGTATGAAGAGAAAACAGTGCTTTAACAATTGGGG
ACGATGTTCCATGTTGGATATTTAGCCTCAAACCATTTGTTATGTCGAGCTTCTAAAATTTTTTTGCTTTTCCATAGGGC
GTTTACTAAGGACTTGGAAGATGATGAATTATAAGATTATTGGTTTCTTAAATGNTGCTTTGCTTNATGGATTGCTGCAT
GATGTGTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis