Browse Element(s) Details


Os.11033.1.S1_at

Description gb:AK064841.1
DB_XREF= gi:32974859
TID=Os.11033.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G03, full insert sequence.
FL= gb:AK064841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0118011/11Nicalin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed
LOC_Os08g01190OsAffx.16772.1.S1_at11/118+132109..132924uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11033.1.S1_at--1058--31Chr08:109119..109143 (25 bp)
ATTGTGCTTTGTGTATTAGTATCCA
LOC_Os08g01180
Os.11033.1.S1_at--559--8771Chr08:109108..109132 (25 bp)
TGTATTAGTATCCAGGAACGCGCTG
LOC_Os08g01180
Os.11033.1.S1_at--254--3491Chr08:109096..109120 (25 bp)
CAGGAACGCGCTGCTAGTTAGAAGA
LOC_Os08g01180
Os.11033.1.S1_at--744--1451Chr08:109077..109101 (25 bp)
AGAAGAGCTAGACACCAGGACGACA
LOC_Os08g01180
Os.11033.1.S1_at--1071--1572Chr08:109039..109063 (25 bp)
AGCTCTCCACAGCAAACAGACTTGT
LOC_Os08g01180
Os.11033.1.S1_at--1079--3251Chr08:109009..109033 (25 bp)
CAAAATTTTCATGTTCGATAGCCAA
LOC_Os08g01180
Os.11033.1.S1_at--176--9631Chr08:109001..109025 (25 bp)
TCATGTTCGATAGCCAATGTGAGTG
LOC_Os08g01180
Os.11033.1.S1_at--1026--2971Chr08:108986..109010 (25 bp)
AATGTGAGTGGCTTCAGATACTGCA
LOC_Os08g01180
Os.11033.1.S1_at--596--5171Chr08:108964..108988 (25 bp)
GCAAGGCAGAAACATCACGAATTTT
LOC_Os08g01180
Os.11033.1.S1_at--1062--8931Chr08:108940..108964 (25 bp)
TGACTGATGAAGCTGCATTTTGTTT
LOC_Os08g01180
Os.11033.1.S1_at--303--4331Chr08:108892..108916 (25 bp)
CCATTTTGGCTACCATGGAATCAAA
LOC_Os08g01180
Target Sequence 
ATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCC
AGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAG
GCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTGCNGGTGCTCNCCATTTTGGCTAC
CATGGAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis