Browse Element(s) Details


Os.11090.1.S1_at

Description gb:AU163884
DB_XREF= gi:11171632
DB_XREF=AU163884
CLONE=E11284
TID=Os.11090.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11090 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177937.1 (A.thaliana) putative transporter (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3171011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31670OsAffx.6000.1.S1_at11/118+19499933..19502410transporter, putative
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified
LOC_Os08g31690OsAffx.17274.1.S1_at11/118+19511367..19512629F-box domain containing protein, expressed
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11090.1.S1_at--879--11Chr08:19516662..19516686 (25 bp)
ATTGGCCAAGGCAGTGTACACGGAG
LOC_Os08g31710
Os.11090.1.S1_at--1138--9911Chr08:19516732..19516756 (25 bp)
TACTGCACGTATCCTCGGGACAGAG
LOC_Os08g31710
Os.11090.1.S1_at--683--6391Chr08:19516756..19516780 (25 bp)
GATCGTGCTCGAAGGAACATTCTGA
LOC_Os08g31710
Os.11090.1.S1_at--677--7991Chr08:19516788..19516812 (25 bp)
GGATGACCAGCTCTGCCAAGAAGCA
LOC_Os08g31710
Os.11090.1.S1_at--1068--2851Chr08:19516827..19516851 (25 bp)
AAGTGAGATTTGTACCCAGGAGGAT
LOC_Os08g31710
Os.11090.1.S1_at--446--2731Chr08:19516853..19516877 (25 bp)
AAGAATTTGCTGTTGGTTCCATAAA
LOC_Os08g31710
Os.11090.1.S1_at--915--7591Chr08:19516917..19516941 (25 bp)
GGGCAGCCTGTTTTACAAAGGTCTC
LOC_Os08g31710
Os.11090.1.S1_at--984--2311Chr08:19516933..19516957 (25 bp)
AAAGGTCTCGCAATCTTCCAGAGTC
LOC_Os08g31710
Os.11090.1.S1_at--134--1351Chr08:19516952..19516976 (25 bp)
AGAGTCTGCACTCTGTTGCTTTCCA
LOC_Os08g31710
Os.11090.1.S1_at--1030--5251Chr08:19517016..19517040 (25 bp)
GAATCGCGCTCATCAACTAGTATTG
LOC_Os08g31710
Os.11090.1.S1_at--363--2511Chr08:19517078..19517102 (25 bp)
AACATCCTGTGAATAAGTGCTGCAA
LOC_Os08g31710
Target Sequence 
ATTGGCCAAGGCAGTGTACACGGAGATCGCCGTGCCCATGGCNATCTGTTGCCTGACATACACCTTCCTGTACTGCACGT
ATCCTCGGGACAGAGATCGTGCTCGAAGGAACATTCTGATGGCATCGGATGACCAGCTCTGCCAAGAAGCAGGTGAGAGT
GACTCAAGTGAGATTTGTACCCAGGAGGATGAAGAATTTGCTGTTGGTTCCATAAACCAGAGGTTAATACATGCAAGAGA
GTAGCATCAGAAGAGGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCATTTTC
AGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAGTATTGGAAGATATATATAGTACCCGA
GAGATGTAATTTATACAACATCCTGTGAATAAGTGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis