Browse Element(s) Details


Os.11121.1.S1_at

Description gb:AK103808.1
DB_XREF= gi:32989017
TID=Os.11121.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor serthr protein kinase (P0436E04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147A10, full insert sequence.
FL= gb:AK103808.1 gb:AK072087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0141011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11121.1.S1_at--810--8871Chr01:203501..203525 (25 bp)
TGAGTGGGCAACACCTCTAGTCCAG
LOC_Os01g01410
Os.11121.1.S1_at--482--7091Chr01:203477..203501 (25 bp)
GTCACACCGGTACCTAGAGCTGTTA
LOC_Os01g01410
Os.11121.1.S1_at--353--10031Chr01:203463..203487 (25 bp)
TAGAGCTGTTAGACCCACTGATTCA
LOC_Os01g01410
Os.11121.1.S1_at--137--10791Chr01:203406..203430 (25 bp)
TTGTTGACTTGGTCTATGCCTGCAC
LOC_Os01g01410
Os.11121.1.S1_at--957--10611Chr01:203369..203393 (25 bp)
TTCGGTGCGACCAAGGATGTCTCAT
LOC_Os01g01410
Os.11121.1.S1_at--315--7991Chr01:203355..203379 (25 bp)
GGATGTCTCATGTGGTCCATCAGCT
LOC_Os01g01410
Os.11121.1.S1_at--877--7991Chr01:203249..203273 (25 bp)
GGAGGTTCGGACTCCTCGCTGAAAT
LOC_Os01g01410
Os.11121.1.S1_at--925--1171Chr01:203200..203224 (25 bp)
AGTAGTTTCCGATGTCAGTCAGCTG
LOC_Os01g01410
Os.11121.1.S1_at--582--3391Chr01:203181..203205 (25 bp)
CAGCTGGCAGCACATCTATTGAAGT
LOC_Os01g01410
Os.11121.1.S1_at--137--5331Chr01:203161..203185 (25 bp)
GAAGTGTCTGCTTAACTAGTACTAG
LOC_Os01g01410
Os.11121.1.S1_at--293--3511Chr01:203039..203063 (25 bp)
CATGTGTACTTGAGTTGGCCTCTAT
LOC_Os01g01410
Target Sequence 
TGAGTGGGCAACACCTCTAGTCCAGTCACACCGGTACCTAGAGCTGTTAGACCCACTGATTCAGGAGTTGCCAGATGTNA
GGTGTCATCCAGAAAGTTGTTGACTTGGTCTATGCCTGCACCCAGCATGTCCCTTCGGTGCGACCAAGGATGTCTCATGT
GGTCCATCAGCTCCAGCAACTTGAGCTAAAGTCAGCAGCATCAGAACAACTGAGCGGCACAAGCACTAGCGCTACATCTC
CANATGTTACCATTGGAGGTTCGGACTCCTCGCTGAAATCCACTGCTAGAGGAAAACCAATTCAGTAGTTTCCGATGTCA
GTCAGCTGGCAGCACATCTATTGAAGTGTCTGCTTAACTAGTACTAGGAGAAGTACTTGAGGGGAGAAGTTAGGACCCCC
ATAGGCCAAACCAAATTAACCTTTGTGTAGCAATGGGCTGTTTGTTGTTAAAATGGTCATTGCNCATGTGTACTTGAGTT
GGCCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis