Browse Element(s) Details


Os.11180.1.S1_at

Description gb:AK060312.1
DB_XREF= gi:32970330
TID=Os.11180.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C02, full insert sequence.
FL= gb:AK060312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4223011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11180.1.S1_at--41--8611Chr05:24613787..24613811 (25 bp)
TGGTCGTGCGCTACCCTGATGATGG
LOC_Os05g42230
Os.11180.1.S1_at--622--6171Chr05:24613864..24613888 (25 bp)
GAGGATGAACCCGTCTACCATGAAG
LOC_Os05g42230
Os.11180.1.S1_at--477--651Chr05:24613883..24613906 (24 bp)
ATGAAGCTCCCGAGGGTCAGAAAGA
LOC_Os05g42230
Os.11180.1.S1_at--84--5531Chr05:24615847..24615871 (25 bp)
GAAAAGAGACGCATCCAGATCACAA
LOC_Os05g42230
Os.11180.1.S1_at--547--3211Chr05:24615869..24615893 (25 bp)
CAAGGAGAGCGTGCGACTTGCTAAT
LOC_Os05g42230
Os.11180.1.S1_at--195--9771Chr05:24615890..24615914 (25 bp)
TAATGCCGATCCCTGTGTAACTGTG
LOC_Os05g42230
Os.11180.1.S1_at--743--9811Chr05:24615907..24615931 (25 bp)
TAACTGTGTGGTCGCTTCTATGTTC
LOC_Os05g42230
Os.11180.1.S1_at--423--10571Chr05:24615922..24615946 (25 bp)
TTCTATGTTCTGCTCCGCGATGCAT
LOC_Os05g42230
Os.11180.1.S1_at--918--10111Chr05:24616064..24616088 (25 bp)
TATGGGCGTTTCATGTTGGCTCCAT
LOC_Os05g42230
Os.11180.1.S1_at--383--4191Chr05:24616102..24616126 (25 bp)
CCCTGTTGTGTCCAATGGCATTCTT
LOC_Os05g42230
Os.11180.1.S1_at--248--2971Chr05:24616115..24616139 (25 bp)
AATGGCATTCTTGGCCAATGTGGCC
LOC_Os05g42230
Target Sequence 
TGGTCGTGCGCTACCCTGATGATGGTGCGGCGGCTGGCGGTGGGGAGGCCGTGGGGGATGAGNTCCGCACGGTGCCTGAG
GATGAACCCGTCTACCATGAAGCTCCCGAGGGTCAGAAAGAAAATTGAGGTGAAAAGAGACGCATCCAGATCACAAGGAG
AGCGTGCGACTTGCTAATGCCGATCCCTGTGTAACTGTGTGGTCGCTTCTATGTTCTGCTCCGCGATGCATTTNCGAGCA
TGTATCAGACTTGTAGATCGTTGCCCTTTGCTGCCATTTGCTTCCTGAGAGATATTTATTATGTTGTCCGGAGGAGAATA
ATCTATTTCTGAAAGAATTGTAGCTGTTGTATGGGCGTTTCATGTTGGCTCCATGGGACATGATCCCCCCTGTTGTGTCC
AATGGCATTCTTGGCCAATGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis