Browse Element(s) Details


Os.11272.1.S1_at

Description gb:AK062477.1
DB_XREF= gi:32972495
TID=Os.11272.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F10, full insert sequence.
FL= gb:AK062477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g370702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein
LOC_Os02g37070Os.11272.1.S1_at2/112+22395614..22395856hypothetical protein
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11272.1.S1_at--133--10531Chr02:22395647..22395671 (25 bp)
TTCAGCTTCCTGTCGTGCAAGTCGA
LOC_Os02g37070
Os.11272.1.S1_at--1145--10671Chr02:22395824..22395848 (25 bp)
TTCCACCAGAGGAAGCAGGTCGCCG
LOC_Os02g37070
Os.11272.1.S1_at--217--10011Chr02:22395854..22395878 (25 bp)
TAGCTAGCTCGATCTACACATCTCG
NONE
Os.11272.1.S1_at--243--3311Chr02:22395894..22395918 (25 bp)
CACAGCTCAACGATACCAATCTTTC
NONE
Os.11272.1.S1_at--184--4491Chr02:22395971..22395995 (25 bp)
GCCGGCGCGGCCATATATATGTACT
NONE
Os.11272.1.S1_at--499--751Chr02:22395989..22396013 (25 bp)
ATGTACTGCATCTGTTGTCTCAACC
NONE
Os.11272.1.S1_at--327--7151Chr02:22396005..22396029 (25 bp)
GTCTCAACCGGCCATTTGTGTACCG
NONE
Os.11272.1.S1_at--413--9951Chr02:22396025..22396049 (25 bp)
TACCGCACCGCATGTACGTACGTAG
NONE
Os.11272.1.S1_at--1155--6931Chr02:22396042..22396066 (25 bp)
GTACGTAGGTCTCCGTTTACATAAT
NONE
Os.11272.1.S1_at--49--3031Chr02:22396161..22396185 (25 bp)
AATGCCGGTTCACAGATCGAGATCT
NONE
Os.11272.1.S1_at--723--6391Chr02:22396175..22396199 (25 bp)
GATCGAGATCTTGCCATGTGTATAT
NONE
Target Sequence 
TTCAGCTTCCTGTCGTGCAAGTCGAGGAGGTACGAGGACGACGACGACGACGGCGAGCTGAGCGGCGAGTGGCCGGCGAG
GTACGGGAGCAAGGTGAGGTCGAGCGACGAGGACTACGGCGCGTGGTGGGTCGGCGAGCGCGACGTCGACCGCAAGGCCT
CCGACTACATCAACAGCTTCCACCAGAGGAAGCAGGTCGCCGCCGCCTAGCTAGCTCGATCTACACATCTCGATCTCCAA
CCACACCCACAGCTCAACGATACCAATCTTTCATTGGATCGAGGGGGACTAGCGTACGCGCGACGGCGACGGCGGACGAC
GGCCGCCGGCGCGGCCATATATATGTACTGCATCTGTTGTCTCAACCGGCCATTTGTGTACCGCACCGCATGTACGTACG
TAGGTCTCCGTTTACATAATTAAATTCTTCTCATATATGTATATGTTAAATTGTTATGTATGTTTGTTGTGGATTATTAT
GTTATATATGTTTATTTAGACCACGAATAATTGTAATGCCGGTTCACAGATCGAGATCTTGCCATGTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis