Browse Element(s) Details


Os.11300.1.S1_at

Description gb:AK120838.1
DB_XREF= gi:37990461
TID=Os.11300.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022B11, full insert sequence.
FL= gb:AK111576.1 gb:AK120838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3890011/11angustifolia, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009965biological_processleaf morphogenesis
GO:0042814biological_processmonopolar cell growth
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11300.1.S1_at--731--2331Chr10:20398274..20398298 (25 bp)
AAAGATGGCTTCGTTGTTGCCCTAA
LOC_Os10g38900
Os.11300.1.S1_at--686--6371Chr10:20398391..20398415 (25 bp)
GATCCTGCTGCTCAGTTTCTAATTA
LOC_Os10g38900
Os.11300.1.S1_at--445--10111Chr10:20398576..20398600 (25 bp)
TATGGGCTTGCGATCTTTTGTTGCT
LOC_Os10g38900
Os.11300.1.S1_at--854--6591Chr10:20399086..20399110 (25 bp)
GTTGGTCAACCGCAAAATTCCTTCG
LOC_Os10g38900
Os.11300.1.S1_at--496--10191Chr10:20399592..20399616 (25 bp)
TATATTGAAATCCTCGCAGCTGTGA
LOC_Os10g38900
Os.11300.1.S1_at--2--10051Chr10:20399644..20399668 (25 bp)
TAGATTGATCCATCTACCCCAGGAG
LOC_Os10g38900
Os.11300.1.S1_at--38--2571Chr10:20399686..20399710 (25 bp)
AACTGACTCAGTATTGTCTTCTGGT
LOC_Os10g38900
Os.11300.1.S1_at--321--7151Chr10:20399701..20399725 (25 bp)
GTCTTCTGGTTTGATTTCCTCTCAA
LOC_Os10g38900
Os.11300.1.S1_at--623--9731Chr10:20399730..20399754 (25 bp)
TCAATTTTAGCTATTCTTACGCGGG
LOC_Os10g38900
Os.11300.1.S1_at--744--1371Chr10:20399764..20399788 (25 bp)
AGAGCCACTGCGTATTCAATATTGT
LOC_Os10g38900
Os.11300.1.S1_at--375--3451Chr10:20399811..20399835 (25 bp)
CAGTATTCAGTATCTCATTGCTTAA
LOC_Os10g38900
Target Sequence 
AAAGATGGCTTCGTTGTTGCCCTAAGGACCAGGGATAATTCAGGGTTTCATGTTGCAAGAGAAAGAGTTGCAGGAGTTGG
GTGGTATCTTGATGTTGTGTCAAAAGCTACAAAGAGGGATCCTGCTGCTCAGTTTCTAATTACTTTTAGAAACAAGGATA
CTATGGGCTTGCGATCTTTTGTTGCTGGTGGCAAGTTATTGCAGGTTAATAAGACTATGGAGCTTGTATTTGCGAGCTAT
TCTTTTGATGTTTGGGAGAGCTGGACGCTGGAGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTC
GGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATGGTGTCACTAGATGGCTAGATTGATCCA
TCTACCCCAGGAGCCTAGGACAATCAAAACAACTGACTCAGTATTGTCTTCTGGTTTGATTTCCTCTCAATTTTTCAATT
TTAGCTATTCTTACGCGGGGCACCTCGCAGAGCCACTGCGTATTCAATATTGTCTAGCTATCTACTCTATTGTATCAGTA
TTCAGTATCTCATTGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis