Browse Element(s) Details


Os.11385.1.S1_a_at

Description gb:AY154917.1
DB_XREF= gi:37359312
TID=Os.11385.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11385 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SPO11-1A mRNA, complete cds; alternatively spliced.
PROD=SPO11-1A
FL= gb:AY154917.1 gb:AY154919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3427011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34230Os.51660.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34230Os.12356.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34240NANA11+19552555..19553388retrotransposon protein, putative, unclassified
LOC_Os11g34250NANA11+19556012..19557313retrotransposon protein, putative, unclassified
LOC_Os11g34260NANA11+19558578..19559096retrotransposon protein, putative, unclassified
LOC_Os11g34270Os.11385.1.S1_a_at11/1111+19569696..19573124Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g34280OsAffx.31291.1.S1_at11/1111+19575670..19576290hypothetical protein
LOC_Os11g34290Os.15833.1.S1_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.22699.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.20631.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.18275.1.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.49936.2.A1_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.33601.3.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11385.1.S1_a_at--117--8011Chr11:19572473..19572497 (25 bp)
GGATGGGCTCCAGATATACTTATAA
LOC_Os11g34270
Os.11385.1.S1_a_at--201--1351Chr11:19572543..19572567 (25 bp)
AGAGATCTTATATGGCTGGGTGCTA
LOC_Os11g34270
Os.11385.1.S1_a_at--863--431Chr11:19572637..19572661 (25 bp)
ATCTTCGTGATTCTCTTCCCAATAT
LOC_Os11g34270
Os.11385.1.S1_a_at--607--1751Chr11:19572803..19572827 (25 bp)
ACCTCAGCTGTTTGCCCATAAGTGA
LOC_Os11g34270
Os.11385.1.S1_a_at--591--791Chr11:19572836..19572860 (25 bp)
ATGGGTTGCCAAACGTGTGTCGCCA
LOC_Os11g34270
Os.11385.1.S1_a_at--432--8711Chr11:19572853..19572877 (25 bp)
TGTCGCCATTTATGCCACTTGTATA
LOC_Os11g34270
Os.11385.1.S1_a_at--1101--10691Chr11:19572880..19572904 (25 bp)
TTGCACGATTGCATCTTGTTTACTG
LOC_Os11g34270
Os.11385.1.S1_a_at--387--1111Chr11:19572924..19572948 (25 bp)
AGTGTGCCACCATCTGGATGATATC
LOC_Os11g34270
Os.11385.1.S1_a_at--643--7991Chr11:19572939..19572963 (25 bp)
GGATGATATCCCCTACTGACTGTAG
LOC_Os11g34270
Os.11385.1.S1_a_at--939--5711Chr11:19572956..19572980 (25 bp)
GACTGTAGTTCTCATTCTGGGTAAT
LOC_Os11g34270
Os.11385.1.S1_a_at--707--6931Chr11:19573013..19573037 (25 bp)
GTAGGAGCAATACCTCTTTGCTGAT
LOC_Os11g34270
Target Sequence 
GGATGGGCTCCAGATATACTTATAAACTTGGCAGCAAAGTAAGGGCTTTTGAGAACTTTGTGTTGCATCTAGAGATCTTA
TATGGCTGGGTGCTAGACCAGAAGATTCTCTACTTTTACAAGNAACCCAATGNNATTTACCAGAGTGCAGCAGAAATCTC
TTACTGATCTTCGTGATTCTCTTCCCAATATTTCGGACAGAGATCGTCTAAACACTGTGTTGGACTGGAACTTTACATTG
AATCTGCATGACATTCTTGATTATGAGAATATTGTAGAGTATTTGACTAATCGAATGGCAGAGTTTGAAGATCCTTGATG
GAGAAAGATCTGACCTCAGCTGTTTGCCCATAAGTGAAGCTGAAGATGGGTTGCCAAACGTGTGTCGCCATTTATGCCAC
TTGTATATTTTGCACGATTGCATCTTGTTTACTGCAATAGGCGATACTGTGCCAGTGTGCCACCATCTGGATGATATCCC
CTACTGACTGTAGTTCTCATTCTGGGTAATTCTAATTCTGGTTTTTAAGAGTATGCTGTAACGTAGGAGCAATACCTCTT
TGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11385.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis