Browse Element(s) Details


Os.11402.1.S1_at

Description gb:AK061557.1
DB_XREF= gi:32971575
TID=Os.11402.1
CNT=77
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.11402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C10, full insert sequence.
FL= gb:AK104772.1 gb:AK104627.1 gb:AK061557.1 gb:AK104478.1 gb:AK119201.1 gb:AK104195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0127011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005624cellular_componentmembrane fraction
GO:0005829cellular_componentcytosol
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11402.1.S1_at--561--6831Chr05:165141..165165 (25 bp)
GTTTCCACCGTGTCATTAAGGACTT
LOC_Os05g01270
Os.11402.1.S1_at--910--271Chr05:165798..165822 (25 bp)
ATATGGCCGGACCTTCAAAGACGAG
LOC_Os05g01270
Os.11402.1.S1_at--523--9691Chr05:165713..165938 (25 bp)
TCAAATTGGTTCATACTGGACCTGG
LOC_Os05g01270
Os.11402.1.S1_at--319--611Chr05:165956..165980 (25 bp)
ATGCTGGGCCAAACACCAATGGCAG
LOC_Os05g01270
Os.11402.1.S1_at--184--4391Chr05:165971..165995 (25 bp)
CCAATGGCAGCCAGTTCTTCATCTG
LOC_Os05g01270
Os.11402.1.S1_at--494--1551Chr05:166228..166252 (25 bp)
AGCTTCCAGTGGTCTAATAGGTGCC
LOC_Os05g01270
Os.11402.1.S1_at--117--7291Chr05:166248..166272 (25 bp)
GTGCCAGAGGGCTAATCTTCTTCCC
LOC_Os05g01270
Os.11402.1.S1_at--109--4731Chr05:166306..166330 (25 bp)
GCTGTGAACTTATCGCATGTTCTCC
LOC_Os05g01270
Os.11402.1.S1_at--843--731Chr05:166322..166346 (25 bp)
ATGTTCTCCGCGCAGTCAGAGATCA
LOC_Os05g01270
Os.11402.1.S1_at--529--3031Chr05:166382..166406 (25 bp)
AATCCTCTATTGTTCGGCTGGAATA
LOC_Os05g01270
Os.11402.1.S1_at--1046--8231Chr05:166397..166421 (25 bp)
GGCTGGAATAAAACGTTCTTACCTG
LOC_Os05g01270
Target Sequence 
GTTTCCACCGTGTCATTAAGGACTTCATGATTCAGGGAGGAGACTTTGACAAGGGCAACGGTACTGGAGGGAAAAGCATA
TATGGCCGGACCTTCAAAGACGAGAACTTCAAATTGGTTCATACTGGACCTGGAGTGGTCAGCATGGCCAATGCTGGGCC
AAACACCAATGGCAGCCAGTTCTTCATCTGCACTGTCAAGACACCTTGGTTGGATGGGAGGCACGTCGTGTTTGGGCAGG
TTATTGAAGGCATGGACATCGTTAAGATGATCGAATCGCAGGAGACTGACAGAGGGGACCGCCCGAAGAAGAAGGTGGTC
ATCAGTGAGTGTGGGGAGCTTCCAGTGGTCTAATAGGTGCCAGAGGGCTAATCTTCTTCCCCCGGAGACTTTGCTGTTTT
TGGTTTCATAGTAAGCTGTGAACTTATCGCATGTTCTCCGCGCAGTCAGAGATCATGCTGAGTTGAGGCCAAGATTTCTA
AGTTGAGAAGAATCCTCTATTGTTCGGCTGGAATAAAACGTTCTTACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis