Browse Element(s) Details


Os.11422.1.S1_at

Description gb:AK121751.1
DB_XREF= gi:37991374
TID=Os.11422.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087I07, full insert sequence.
FL= gb:AK121751.1 gb:AK070123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0288011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11422.1.S1_at--816--671Chr02:1106711..1106735 (25 bp)
ATGAAAAGCTGCTTCCGCTGCAGGA
LOC_Os02g02880
Os.11422.1.S1_at--650--9051Chr02:1106693..1106717 (25 bp)
TGCAGGAATTCTTGTCGCCCATCTT
LOC_Os02g02880
Os.11422.1.S1_at--836--10511Chr02:1106649..1106673 (25 bp)
TTCACCCCTGGACAAGCAAGCTATA
LOC_Os02g02880
Os.11422.1.S1_at--830--1831Chr02:1106625..1106649 (25 bp)
ACGCTGTCACGGTGCTTGGTTACAA
LOC_Os02g02880
Os.11422.1.S1_at--485--10491Chr02:1106557..1106581 (25 bp)
TTAAATGTTGCCTTCGCTGCTTATC
LOC_Os02g02880
Os.11422.1.S1_at--1145--2371Chr02:1106522..1106546 (25 bp)
AAACGACTCGCCGTGTGAGATTCTT
LOC_Os02g02880
Os.11422.1.S1_at--882--6571Chr02:1106488..1106512 (25 bp)
GATTCTGCAGTGACACCCACAATGA
LOC_Os02g02880
Os.11422.1.S1_at--923--1431Chr02:1106463..1106487 (25 bp)
AGAACTGCTTTTGTGTCACTGGCTG
LOC_Os02g02880
Os.11422.1.S1_at--1025--8751Chr02:1106429..1106453 (25 bp)
TGTAGATGCCTGAAGCTGTGCTCAA
LOC_Os02g02880
Os.11422.1.S1_at--600--1971Chr02:1106387..1106411 (25 bp)
ACTGCATGGTCTGTACTGGATGTCT
LOC_Os02g02880
Os.11422.1.S1_at--765--31Chr02:1106357..1106381 (25 bp)
ATTGTATACCAACCGTCTCTTGCAA
LOC_Os02g02880
Target Sequence 
ATGAAAAGCTGCTTCCGCTGCAGGAATTCTTGTCGCCCATCTTTTGCTTGCTGGTGTGGGCATTCACCCCTGGACAAGCA
AGCTATACGCTGTCACGGTGCTTGGTTACAAGTAACGTTAAATGTTTTTTTTTTTTTTTGGCGGGGAAAGTAACGTTAAA
TGTTGCCTTCGCTGCTTATCCGAAATTGGAAAACGACTCGCCGTGTGAGATTCTTCCTTTTCCAGATTCTGCAGTGACAC
CCACAATGAAGAACTGCTTTTGTGTCACTGGCTGTGAGATGTTTGTAGATGCCTGAAGCTGTGCTCAAAATATCCGTAGA
AATACACTGCATGGTCTGTACTGGATGTCTGGATGATTGTATACCAACCGTCTCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis