Browse Element(s) Details


Os.11439.1.S1_at

Description gb:AK102588.1
DB_XREF= gi:32987797
TID=Os.11439.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098F09, full insert sequence.
FL= gb:AK060852.1 gb:AK102588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5169011/11Glycosyl hydrolase family 47 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed
LOC_Os04g51700OsAffx.4148.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_s_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51710Os.47950.1.S1_at11/114+30423048..30426765expressed protein
LOC_Os04g51720Os.28943.1.S1_x_at1/114+30430106..30433317retrotransposon protein, putative, unclassified
LOC_Os04g51730NANA4+30434108..30436108retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006487biological_processprotein amino acid N-linked glycosylation
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11439.1.S1_at--177--5051Chr04:30402653..30402677 (25 bp)
GCAGAGACTCTCAAGTACCTATACC
LOC_Os04g51690
Os.11439.1.S1_at--468--251Chr04:30402605..30402629 (25 bp)
ATATCCTTCGATGAGTGGGTCTTCA
LOC_Os04g51690
Os.11439.1.S1_at--605--5411Chr04:30402575..30402599 (25 bp)
GAAGCCCACCCATTGCGAATTGTTC
LOC_Os04g51690
Os.11439.1.S1_at--664--931Chr04:30402443..30402467 (25 bp)
AGGAATTTTTCATCTGCCCTCTGAT
LOC_Os04g51690
Os.11439.1.S1_at--1130--6511Chr04:30402421..30402445 (25 bp)
GATTTTTGACCTGCCTGATCCAAGG
LOC_Os04g51690
Os.11439.1.S1_at--521--1511Chr04:30402386..30402410 (25 bp)
AGCAGCGATTCTGCCTGTAGCAGTA
LOC_Os04g51690
Os.11439.1.S1_at--525--2951Chr04:30402264..30402288 (25 bp)
AATCGAAGACCAATAACCCCATGAA
LOC_Os04g51690
Os.11439.1.S1_at--452--10711Chr04:30402218..30402242 (25 bp)
TTGCGCTCCCTGCATTATTGATCTG
LOC_Os04g51690
Os.11439.1.S1_at--903--8291Chr04:30402150..30402174 (25 bp)
GGCTTCCGTGGAGTTGTATTTTCAT
LOC_Os04g51690
Os.11439.1.S1_at--461--10751Chr04:30402137..30402161 (25 bp)
TTGTATTTTCATTACGTGGCCCGAC
LOC_Os04g51690
Os.11439.1.S1_at--623--7551Chr04:30402122..30402146 (25 bp)
GTGGCCCGACTTGTGACATTTTGAA
LOC_Os04g51690
Target Sequence 
GCAGAGACTCTCAAGTACCTATACCTCCTGTTCTCTCCTCCNTCAGTCATATCCTTCGATGAGTGGGTCTTCAATACCGA
AGCCCACCCATTGCGAATTGTTCCTTTAAATGACAATANCNAANCCCACTCAGTAGGCATTGCAACNCCGACGGTACGAC
CGTTCGGGAGGAANCAGGGGAAACAAGAGTAGATTTGAACCATAGAGCACAGGAATTTTTCATCTGCCCTCTGATTTTTG
ACCTGCCTGATCCAAGGTTCTGACAGGAGCAGCGATTCTGCCTGTAGCAGTATAAGGGCTGAAAGTCATGGCAATAGGCT
GTTTAGGCAACGGAATTATAGGTAGAGCACGATGAGATATTCTGGGGCACATTGAAACTTCAGAGTATAAATCGAAGACC
AATAACCCCATGAAAGTTTATATTTCTGTACTTGTTTGCGCTCCCTGCATTATTGATCTGTCATGTAAATCTAACAGTGT
CCATATGTTGTTGGTTACACGGGGGCTTCCGTGGAGTTGTATTTTCATTACGTGGCCCGACTTGTGACATTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis