Browse Element(s) Details


Os.11478.1.S1_at

Description gb:AK112101.1
DB_XREF= gi:37988764
TID=Os.11478.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B02, full insert sequence.
FL= gb:AK112101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3844011/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed
LOC_Os09g38429NANA9+22120102..22120353hypothetical protein
LOC_Os09g38440Os.11478.1.S1_at11/119+22129970..22134245SET domain containing protein, expressed
LOC_Os09g38450Os.48054.1.S1_at11/119+22134382..22136559expressed protein
LOC_Os09g38460NANA9+22138056..22139114hypothetical protein
LOC_Os09g38470OsAffx.30629.1.A1_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38470OsAffx.22026.3.S1_s_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38480NANA9+22145223..22147030hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11478.1.S1_at--695--7991Chr09:22133356..22133380 (25 bp)
GGATGGAAGCATTTGGTAGTGTACA
LOC_Os09g38440
Os.11478.1.S1_at--866--7851Chr09:22133370..22133394 (25 bp)
GGTAGTGTACAAATCTAGCATTCAT
LOC_Os09g38440
Os.11478.1.S1_at--447--451Chr09:22133382..22133406 (25 bp)
ATCTAGCATTCATGGGCTTGGTCTC
LOC_Os09g38440
Os.11478.1.S1_at--676--4931Chr09:22133397..22133421 (25 bp)
GCTTGGTCTCTACACATCGGAGTTT
LOC_Os09g38440
Os.11478.1.S1_at--715--491Chr09:22133412..22133436 (25 bp)
ATCGGAGTTTATTCCACGTGGCTCT
LOC_Os09g38440
Os.11478.1.S1_at--146--3351Chr09:22133426..22133543 (25 bp)
CACGTGGCTCTATGGTTGTACAGTA
LOC_Os09g38440
Os.11478.1.S1_at--158--2791Chr09:22133580..22133604 (25 bp)
AAGAGAGATTGAATACCAGTCCGGG
LOC_Os09g38440
Os.11478.1.S1_at--1038--1331Chr09:22133621..22133645 (25 bp)
AGAGTGCTTGTTACTTCTTCAAGAT
LOC_Os09g38440
Os.11478.1.S1_at--947--3211Chr09:22133676..22133700 (25 bp)
CAAGGGTGGGATCGCAAGATTCATC
LOC_Os09g38440
Os.11478.1.S1_at--387--1471Chr09:22133968..22133989 (22 bp)
AGAAGGTAGTGTTCTTCGCGGAACG
LOC_Os09g38440
Os.11478.1.S1_at--191--10631Chr09:22133979..22134003 (25 bp)
TTCGCGGAACGCCACATAAATCCGG
LOC_Os09g38440
Target Sequence 
GGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTC
TATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGNCTGACAAAAGAGAGATTGAATACCAGTCCGGGNAA
CGGCAGCAATATANAGAGTGCTTGTTACTTCTTCAAGATTNGGAAAGGAACATATCATCNGATGCCACCCNGCAAGGGTG
GGATCGCAAGATTCATCNAANCNNTNNTGNNNNNNNNANNNNNNNGNNNNNAAAATAATCTCAGTAAGGAACGAGAAGAA
GGTAGTGTTCTTCGCGGAACGCCACATAAATCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis