Browse Element(s) Details


Os.1148.1.S1_at

Description gb:AB042934.1
DB_XREF= gi:12583658
TID=Os.1148.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1148 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for plastid ribosomal protein L11, complete cds.
PROD=plastid ribosomal protein L11
FL= gb:AB042934.1 gb:AK065033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0302011/1150S ribosomal protein L11, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03050Os.38395.1.S1_at11/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.3.S1_x_at6/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.2.S1_x_at5/113+1237693..1238873expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0009282cellular_componentcytosolic large ribosomal subunit (sensu Bacteria)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1148.1.S1_at--1034--8611Chr03:1212440..1212464 (25 bp)
TGGTGGGCCTCATAAAGCTGGCGCT
LOC_Os03g03020
Os.1148.1.S1_at--100--7371Chr03:1212357..1212381 (25 bp)
GTGAACATCATGTCCTTCTGCAAGG
LOC_Os03g03020
Os.1148.1.S1_at--681--10591Chr03:1212129..1212148 (20 bp)
TTCTCCTCAAGGCAGCAGGTATCGA
LOC_Os03g03020
Os.1148.1.S1_at--1060--2771Chr03:1210977..1211001 (25 bp)
AAGAGCATTGACTCGGCCATGAGAA
LOC_Os03g03020
Os.1148.1.S1_at--775--1631Chr03:1210948..1210972 (25 bp)
AGCGGGCACTGCTGCTAATATGGGA
LOC_Os03g03020
Os.1148.1.S1_at--1119--6151Chr03:1210920..1210944 (25 bp)
GAGGTTGACCCTCCAATACTTGAGA
LOC_Os03g03020
Os.1148.1.S1_at--1035--2311Chr03:1210888..1210912 (25 bp)
AAAGGTGCTCTTGTAGTCTGTTTCT
LOC_Os03g03020
Os.1148.1.S1_at--870--1151Chr03:1210874..1210898 (25 bp)
AGTCTGTTTCTCTGGCACCCATGAA
LOC_Os03g03020
Os.1148.1.S1_at--365--9011Chr03:1210853..1210877 (25 bp)
TGAATCACCTTACTGATGGCCACCT
LOC_Os03g03020
Os.1148.1.S1_at--380--8431Chr03:1210836..1210860 (25 bp)
GGCCACCTGTAGATTTTACTTCCTT
LOC_Os03g03020
Os.1148.1.S1_at--42--10051Chr03:1210788..1210812 (25 bp)
TAGTGCTTGAATCTTTTTCCCTCCG
LOC_Os03g03020
Target Sequence 
TGGTGGGCCTCATAAAGCTGGCGCTGGAGGCCGGGAAGGCCACGCCGGCGCCGCCGGTCGGCCCCGCGCTTGGTGCCAAG
GGTGTGAACATCATGTCCTTCTGCAAGGAGTACAATGCCAAGACGGCCGAGAAGGCCGGCTACATCATCCCTGTCGAGAT
CACCGTGTTCGATGATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGGTA
TCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAACAGCAGATCAAGTACGTACAATAGCTCAAGAG
AAGTTGCCAGATTTGAACTGCAAGAGCATTGACTCGGCCATGAGAATTATAGCGGGCACTGCTGCTAATATGGGAATCGA
GGTTGACCCTCCAATACTTGAGAAGAAGGAAAAGGTGCTCTTGTAGTCTGTTTCTCTGGCACCCATGAATCACCTTACTG
ATGGCCACCTGTAGATTTTACTTCCTTTTTGTTCGTCAATATGTTGTTCCTAGTGCTTGAATCTTTTTCCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis