Browse Element(s) Details


Os.11487.1.S1_s_at

Description gb:NM_190697.1
DB_XREF= gi:34908477
GEN=P0489B03.15
TID=Os.11487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11487 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 60S ribosomal protein (P0489B03.15), mRNA.
PROD=putative 60S ribosomal protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6409011/1160S ribosomal protein L10a-1, putative, expressed
LOC_Os02g216601/1160S ribosomal protein L10a-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64090Os.11487.1.S1_s_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64090OsAffx.2398.1.S1_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64100Os.28531.1.S1_at11/111+37562630..37564055Acidic endochitinase precursor, putative, expressed
LOC_Os01g64110Os.170.1.S1_at11/111+37566432..37567624Hevamine A precursor, putative, expressed
LOC_Os01g64120Os.170.3.S1_at10/111+37568006..37568936Ferredoxin-2, chloroplast precursor, putative, expressed
LOC_Os01g64130NANA1+37572420..37573484hypothetical protein
LOC_Os01g64140NANA1+37575693..37576265hypothetical protein
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11487.1.S1_s_at--152--6351Chr01:37559236..37559260 (25 bp)
GATGCTCTTAGGGAGGCAATCTCAC
LOC_Os01g64090
Os.11487.1.S1_s_at--731--8011Chr01:37559247..37559271 (25 bp)
GGAGGCAATCTCACAAATTACTAGT
LOC_Os01g64090
Os.11487.1.S1_s_at--110--151Chr01:37559263..37559287 (25 bp)
ATTACTAGTGAATCCCGCGAGAAGC
LOC_Os01g64090
Os.11487.1.S1_s_at--908--7511Chr01:37559299..37559323 (25 bp)
GTGGAAACCATTGAACTGCAGATTG
LOC_Os01g64090
Os.11487.1.S1_s_at--589--8112Chr02:12870576..12870600 (25 bp)
GGACTGAAGAACTATGACCCTCAAA
LOC_Os02g21660
Os.11487.1.S1_s_at--909--991Chr01:37559348..37559372 (25 bp)
AGGATAAGCGTTTCAGTGGATCTGT
LOC_Os01g64090
Os.11487.1.S1_s_at--1090--8551Chr01:37559364..37559388 (25 bp)
TGGATCTGTTAAGTTGCCTCACATC
LOC_Os01g64090
Os.11487.1.S1_s_at--1135--10671Chr01:37560036..37560060 (25 bp)
TTCCTTGCATCTGAGGCCATCATTA
LOC_Os01g64090
Os.11487.1.S1_s_at--450--10491Chr01:37560058..37560082 (25 bp)
TTAAGCAGATTCCTCGACTTCTTGG
LOC_Os01g64090
Os.11487.1.S1_s_at--104--3151Chr01:37560595..37560619 (25 bp)
AATTCCCAACGTTGGTGACTCACCA
LOC_Os01g64090
Os.11487.1.S1_s_at--1085--2991Chr01:37560749..37560773 (25 bp)
AATGAGCGTGAACTTCCTTGTCTCT
LOC_Os01g64090
Target Sequence 
GATGCTCTTAGGGAGGCAATCTCACAAATTACTAGTGAATCCCGCGAGAAGCAGCGCAAGTTCGTGGAAACCATTGAACT
GCAGATTGGACTGAAGAACTATGACCCTCAAAAGGATAAGCGTTTCAGTGGATCTGTTAAGTTGCCTCACATCCCCCGCC
CTAAGATGAAGGCAGAGAAAATGGGCCTAGACTATATGGATGTGGAAGCTCTCAAGAAGATGAACAAAAACAAGAAGCTG
GTTAAGAAGCTTGCAAAGAAATATCACGCTTTCCTTGCATCTGAGGCCATCATTAAGCAGATTCCTCGACTTCTTGGACC
TGGCAAATTCCCAACGTTGGTGACTCACCAGGAATCACTTGAGTCCAAGGTTAACGAGACTAAGGCTACAGTGAAGTTCC
AACTGAAAAAGGTTCTTTGCATGGGTGTTGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAA
ATGAGCGTGAACTTCCTTGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11487.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis