Browse Element(s) Details


Os.28531.1.S1_at

Description gb:AK111415.1
DB_XREF= gi:32996624
TID=Os.28531.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chitinase (P0489B03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G02, full insert sequence.
FL= gb:AK111415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6410011/11Acidic endochitinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64090Os.11487.1.S1_s_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64090OsAffx.2398.1.S1_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64100Os.28531.1.S1_at11/111+37562630..37564055Acidic endochitinase precursor, putative, expressed
LOC_Os01g64110Os.170.1.S1_at11/111+37566432..37567624Hevamine A precursor, putative, expressed
LOC_Os01g64120Os.170.3.S1_at10/111+37568006..37568936Ferredoxin-2, chloroplast precursor, putative, expressed
LOC_Os01g64130NANA1+37572420..37573484hypothetical protein
LOC_Os01g64140NANA1+37575693..37576265hypothetical protein
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28531.1.S1_at--727--6951Chr01:37563623..37563647 (25 bp)
GTACTACGACGATCAAACCGGCTAC
LOC_Os01g64100
Os.28531.1.S1_at--945--9291Chr01:37563651..37563675 (25 bp)
TCCGCCATCAAGAGCCACGTGTGAT
LOC_Os01g64100
Os.28531.1.S1_at--1041--2231Chr01:37563677..37563701 (25 bp)
ACAATTCACGTGTTCTATACCATTA
LOC_Os01g64100
Os.28531.1.S1_at--85--171Chr01:37563698..37563722 (25 bp)
ATTATACGTTCCAGAGCGCGTGTGC
LOC_Os01g64100
Os.28531.1.S1_at--436--4571Chr01:37563713..37563737 (25 bp)
GCGCGTGTGCACCTTACGTAATGTA
LOC_Os01g64100
Os.28531.1.S1_at--330--8691Chr01:37563757..37563781 (25 bp)
TGTGACTGTGCTGCGACGTATTTAT
LOC_Os01g64100
Os.28531.1.S1_at--410--791Chr01:37563925..37563949 (25 bp)
ATGTGTTGATTGCTTTCGGTTACCG
LOC_Os01g64100
Os.28531.1.S1_at--293--6771Chr01:37563957..37563981 (25 bp)
GTTTAGACCGTAGCTTACCATTGCC
LOC_Os01g64100
Os.28531.1.S1_at--72--6831Chr01:37563986..37564010 (25 bp)
GTTTAATTTCATTCGTTCGCCACTG
LOC_Os01g64100
Os.28531.1.S1_at--1022--4031Chr01:37563999..37564023 (25 bp)
CGTTCGCCACTGTCGTTTATATGAA
LOC_Os01g64100
Os.28531.1.S1_at--739--2431Chr01:37564031..37564055 (25 bp)
AAAAGGTGACCATTTGTTGCAGCTT
LOC_Os01g64100
Target Sequence 
GTACTACGACGATCAAACCGGCTACAGCTCCGCCATCAAGAGCCACGTGTGATCACAATTCACGTGTTCTATACCATTAT
ACGTTCCAGAGCGCGTGTGCACCTTACGTAATGTACGCATCACTAGCTAGAGTGTGTGACTGTGCTGCGACGTATTTATA
ATACTTCCTCCGTTCCATAATGTACATTATGTTATTCTAGCATTTTCTATATCCATATAATATAGATGTGGAAAATGATA
GAATGACTTACATTATGAAACGGATATTTGAGTATATATGTAGCACAGTGATGTGTAGGAGCATGTGTTGATTGCTTTCG
GTTACCGGTCAGACGTTTAGACCGTAGCTTACCATTGCCCCCAGTTTAATTTCATTCGTTCGCCACTGTCGTTTATATGA
AGAATAAAAAAAGGTGACCATTTGTTGCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis