Browse Element(s) Details


Os.170.1.S1_at

Description gb:AB003195.1
DB_XREF= gi:2425169
TID=Os.170.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.170 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for basic class III chitinase OsChib3b, complete cds.
PROD=basic class III chitinase OsChib3b
FL= gb:AK099172.1 gb:AK058878.1 gb:AB003195.1 gb:AK103976.1 gb:AK104120.1 gb:D55711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6411011/11Hevamine A precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64090Os.11487.1.S1_s_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64090OsAffx.2398.1.S1_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64100Os.28531.1.S1_at11/111+37562630..37564055Acidic endochitinase precursor, putative, expressed
LOC_Os01g64110Os.170.1.S1_at11/111+37566432..37567624Hevamine A precursor, putative, expressed
LOC_Os01g64120Os.170.3.S1_at10/111+37568006..37568936Ferredoxin-2, chloroplast precursor, putative, expressed
LOC_Os01g64130NANA1+37572420..37573484hypothetical protein
LOC_Os01g64140NANA1+37575693..37576265hypothetical protein
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.170.1.S1_at--998--8051Chr01:37566989..37567013 (25 bp)
GGAGCAGCAAGAAGCCGGTGTACCT
LOC_Os01g64110
Os.170.1.S1_at--654--2151Chr01:37567124..37567148 (25 bp)
ACAGCTCGTCCAACGGCGTGGGCAA
LOC_Os01g64110
Os.170.1.S1_at--672--7311Chr01:37567270..37567294 (25 bp)
GTGCTCCCCGTGGTGAAGAAGTCTC
LOC_Os01g64110
Os.170.1.S1_at--89--7971Chr01:37567307..37567331 (25 bp)
GGATCATGCTGTGGTCGCGGTACTA
LOC_Os01g64110
Os.170.1.S1_at--50--9311Chr01:37567321..37567345 (25 bp)
TCGCGGTACTATGACGGGCTCACGG
LOC_Os01g64110
Os.170.1.S1_at--179--5313Chr04:8697273..8697295 (23 bp)
GAAGTCCAGCGTTTGAGCTAGCCAG
NONE
Os.170.1.S1_at--671--4851Chr01:37567378..37567402 (25 bp)
GCTAGCCAGGGTAAGCTCGTGTCAG
LOC_Os01g64110
Os.170.1.S1_at--1064--9631Chr01:37567399..37567423 (25 bp)
TCAGGTCGGCGTTCGCGTAGAATCA
LOC_Os01g64110
Os.170.1.S1_at--643--6951Chr01:37567415..37567439 (25 bp)
GTAGAATCACACGTGCCGCGCGTTC
LOC_Os01g64110
Os.170.1.S1_at--168--4152Chr04:8697353..8697377 (25 bp)
CGCGCGTTCCCTGCAAGATGGAGTA
NONE
Os.170.1.S1_at--846--2793Chr04:8697416..8697440 (25 bp)
AAGATGGCCGGCTTGTATACTCATT
NONE
Target Sequence 
GGAGCAGCAAGAAGCCGGTGTACCTGACGGCGGCGCCACAGTGCCCCTTCCCGGACGCGTCGCTCGGCGTCGCGCTCAGC
ACCGGCCTGTTCGACTACGTGTGGGTGCAGTTCTACAACAACCCGCCGTGCCAGTACAGCTCGTCCAACGGCGTGGGCAA
CCTGGCGAGCGCGTGGAAGCAGTGGACGTCGATCCCGGCGGGACGGGTGTTCCTCGGCCTGCCGGCGGCNGCGGAGGCCG
CCGGCAGCGGGTTCGTGGAGACGAGCGACCTGGTGTCGAAGGTGCTCCCCGTGGTGAAGAAGTCTCCCAAGTACGGAGGG
ATCATGCTGTGGTCGCGGTACTATGACGGGCTCACGGGGTACAGCGACAAGGTGAAGTCCAGCGTTTGAGCTAGCCAGGG
TAAGCTCGTGTCAGGTCGGCGTTCGCGTAGAATCACACGTGCCGCGCGTTCCCTGCAAGATGGAGTAGTTTCTACACATT
TCAGAACAAAGCAAACATGTACAATAAGATGGCCGGCTTGTATACTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis