Browse Element(s) Details


OsAffx.2398.1.S1_at

Description tigr:9629.m06347
TID=OsAffx.2398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=L1P family of ribosomal proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6409011/1160S ribosomal protein L10a-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64090Os.11487.1.S1_s_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64090OsAffx.2398.1.S1_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64100Os.28531.1.S1_at11/111+37562630..37564055Acidic endochitinase precursor, putative, expressed
LOC_Os01g64110Os.170.1.S1_at11/111+37566432..37567624Hevamine A precursor, putative, expressed
LOC_Os01g64120Os.170.3.S1_at10/111+37568006..37568936Ferredoxin-2, chloroplast precursor, putative, expressed
LOC_Os01g64130NANA1+37572420..37573484hypothetical protein
LOC_Os01g64140NANA1+37575693..37576265hypothetical protein
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2398.1.S1_at--638--10311Chr01:37561230..37561254 (25 bp)
TTTCTTCATGCTCCTCGAATTTCTA
LOC_Os01g64090
OsAffx.2398.1.S1_at--411--9351Chr01:37561244..37561268 (25 bp)
TCGAATTTCTAGAGACTTCCCTGCT
LOC_Os01g64090
OsAffx.2398.1.S1_at--682--2051Chr01:37561258..37561282 (25 bp)
ACTTCCCTGCTTGGAACTTTTATTG
LOC_Os01g64090
OsAffx.2398.1.S1_at--858--5471Chr01:37561271..37561295 (25 bp)
GAACTTTTATTGTTTTCTCAACTAT
LOC_Os01g64090
OsAffx.2398.1.S1_at--326--10811Chr01:37561303..37561327 (25 bp)
TTGTGCAACAAGTTCAGAAATCATT
LOC_Os01g64090
OsAffx.2398.1.S1_at--916--6551Chr01:37561340..37561364 (25 bp)
GATTAACTTGACTTCAACCGTTGAA
LOC_Os01g64090
OsAffx.2398.1.S1_at--205--8971Chr01:37561361..37561385 (25 bp)
TGAAATCTTTCTGTGGTACTCCAAG
LOC_Os01g64090
OsAffx.2398.1.S1_at--341--6991Chr01:37561376..37561400 (25 bp)
GTACTCCAAGTGGTCGGTAACCTGC
LOC_Os01g64090
OsAffx.2398.1.S1_at--1072--9431Chr01:37561389..37561413 (25 bp)
TCGGTAACCTGCTGTGCGAATTATT
LOC_Os01g64090
OsAffx.2398.1.S1_at--29--1771Chr01:37561395..37561419 (25 bp)
ACCTGCTGTGCGAATTATTTTTTCC
LOC_Os01g64090
OsAffx.2398.1.S1_at--847--10351Chr01:37561413..37561437 (25 bp)
TTTTTCCTGCACCACATTATTGTCT
LOC_Os01g64090
Target Sequence 
TTTCTTCATGCTCCTCGAATTTCTAGAGACTTCCCTGCTTGGAACTTTTATTGTTTTCTCAACTATCATTTTTTTGTGCA
ACAAGTTCAGAAATCATTTTTGATGTTATCGATTAACTTGACTTCAACCGTTGAAATCTTTCTGTGGTACTCCAAGTGGT
CGGTAACCTGCTGTGCGAATTATTTTTTCCTGCACCACATTATTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis