Browse Element(s) Details


Os.11494.1.S1_a_at

Description gb:AK072548.1
DB_XREF= gi:32982571
TID=Os.11494.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29883 putative 2-dehydro-3-deoxyphosphooctonate aldolase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126L03, full insert sequence.
FL= gb:AK072548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1078410/112-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10760OsAffx.19599.1.S1_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.19599.1.S1_x_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.24646.1.S1_at1/1112+5785004..5785551hypothetical protein
LOC_Os12g10770OsAffx.29203.3.A1_x_at1/1112+5792003..5796844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005737cellular_componentcytoplasm
GO:0008676molecular_function3-deoxy-8-phosphooctulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11494.1.S1_a_at--728--4331NONE
CCATGTTTGGCTACAATGATCTAAT
NONE
Os.11494.1.S1_a_at--1053--9991Chr12:5805145..5805169 (25 bp)
TAGCTGATGTAACGCATGCTCTACA
LOC_Os12g10784
Os.11494.1.S1_a_at--522--3531Chr12:5805159..5805183 (25 bp)
CATGCTCTACAACAGCCTGCTGGAA
LOC_Os12g10784
Os.11494.1.S1_a_at--560--7551Chr12:5805499..5805523 (25 bp)
GGGCTTACGAGAACTAATACCATGC
LOC_Os12g10784
Os.11494.1.S1_a_at--792--4331Chr12:5805518..5805542 (25 bp)
CCATGCATCGCAAGGACTTCTGTTG
LOC_Os12g10784
Os.11494.1.S1_a_at--1047--2051Chr12:5805533..5805557 (25 bp)
ACTTCTGTTGCTGTCGGAGTTGATG
LOC_Os12g10784
Os.11494.1.S1_a_at--807--7831Chr12:5805695..5805719 (25 bp)
GGTACATGATGATCCCTTGAACGCA
LOC_Os12g10784
Os.11494.1.S1_a_at--704--3611Chr12:5805710..5805734 (25 bp)
CTTGAACGCACCTTGTGATGGCCCA
LOC_Os12g10784
Os.11494.1.S1_a_at--1107--2531Chr12:5805734..5805881 (25 bp)
AACTCAATGGCCACTGCGCAATTTG
LOC_Os12g10784
Os.11494.1.S1_a_at--282--6591Chr12:5805902..5806002 (25 bp)
GATTGCAATTGCTCGAGTCACCAAG
LOC_Os12g10784
Os.11494.1.S1_a_at--162--1451Chr12:5806007..5806031 (25 bp)
AGAAGCCACTCAAGATCGATCTCAC
LOC_Os12g10784
Target Sequence 
CCATGTTTGGCTACAATGATCTAATTGTTGATCCAAGGAATTTTGAGTGGCTGAGAGAAGCTAATTGTCCAGTTGTAGCT
GATGTAACGCATGCTCTACAACAGCCTGCTGGAAAAAAGCTTGATGGTGGAGGTGTTGCAAGTGGGGGCTTACGAGAACT
AATACCATGCATCGCAAGGACTTCTGTTGCTGTCGGAGTTGATGGTATTTTCATGGAGGTACATGATGATCCCTTGAACG
CACCTTGTGATGGCCCAACTCAATGGCCACTGCGCAATTTGGAGGAGCTATTAGAGGAGCTGATTGCAATTGCTCGAGTC
ACCAAGGGAAAGAAGCCACTCAAGATCGATCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11494.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis