Browse Element(s) Details


Os.11551.1.S1_at

Description gb:AK064360.1
DB_XREF= gi:32974378
TID=Os.11551.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B09, full insert sequence.
FL= gb:AK099362.1 gb:AK102034.1 gb:AK064360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0441011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein
LOC_Os05g04380Os.6592.1.S1_a_at11/115+1988177..1992981Peroxidase family protein, expressed
LOC_Os05g04390OsAffx.4249.1.S1_at11/115+2000170..2000905hypothetical protein
LOC_Os05g04400Os.20602.2.S1_x_at11/115+2001710..2003890hypothetical protein
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04440OsAffx.4250.1.S1_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04440OsAffx.4250.1.S1_s_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04450Os.11555.1.S1_at11/115+2028518..2030131Peroxidase family protein, expressed
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11551.1.S1_at--656--1891Chr05:2007451..2007475 (25 bp)
ACGTCGAACGGCAGAAGGGTGTCCA
LOC_Os05g04410
Os.11551.1.S1_at--60--2471Chr05:2007606..2007630 (25 bp)
AACAACCTGCAGAACCGGGTGCTGT
LOC_Os05g04410
Os.11551.1.S1_at--1136--1411Chr05:2007616..2007640 (25 bp)
AGAACCGGGTGCTGTTCAAGTCGGA
LOC_Os05g04410
Os.11551.1.S1_at--617--3471Chr05:2007683..2007707 (25 bp)
CGAGTACAGGGACAACGCCACCAAG
LOC_Os05g04410
Os.11551.1.S1_at--264--3351Chr05:2007701..2007725 (25 bp)
CACCAAGTGGGACGTGGACTTCGCC
LOC_Os05g04410
Os.11551.1.S1_at--1071--1071Chr05:2007760..2007784 (25 bp)
AGGGCACCCACTTCGAGATCAGGAA
LOC_Os05g04410
Os.11551.1.S1_at--554--6311Chr05:2007793..2007817 (25 bp)
GATGCACCAACCAGAACTACTACTA
LOC_Os05g04410
Os.11551.1.S1_at--423--7091Chr05:2007834..2007858 (25 bp)
GTCAACGATCGAGTCAGCGGAAAAA
LOC_Os05g04410
Os.11551.1.S1_at--441--6751Chr05:2007879..2007903 (25 bp)
GTATACGCGTAGTGTACGTACATTA
LOC_Os05g04410
Os.11551.1.S1_at--211--4031Chr05:2007919..2007943 (25 bp)
CGTACCTACTGTAATATCACCTTGG
LOC_Os05g04410
Os.11551.1.S1_at--387--2011Chr05:2007956..2007980 (25 bp)
ACTACTGCATCGTTAATCTTAAGTC
LOC_Os05g04410
Target Sequence 
ACGTCGAACGGCAGAAGGGTGTCCAGCGCACGGACAACCCGGCGGAGAAGAACAACATCCGCGACATGGGCNCGGCGTTC
CAGAGCGCCGCCGGGTACGACGCCGCCGGCGTGGACACGNCGGCGGTGGGGGCGCTGGACAACAGCTACTACCACAACAA
CCTGCAGAACCGGGTGCTGTTCAAGTCGGANTGGGTGCTGCGCACCGACGGCGACGCCGCCGCCGACNTCGCCGAGTACA
GGGACAACGCCACCAAGTGGGACGTGGACTTCGCCNCCGCCATGGCCAAGCTCAGCAAGCTCCCCGCCGAGGGCACCCAC
TTCGAGATCAGGAAGACTTGCAGATGCACCAACCAGAACTACTACTAGTAGTAGTAGTAACTAGTCAACGATCGAGTCAG
CGGAAAAAAATACGACGGTATTATACTAGTATACGCGTAGTGTACGTACATTAATACGACTACTTGTACGTACCTACTGT
AATATCACCTTGGTTTAAAATTATTACTACTGCATCGTTAATCTTAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis