Browse Element(s) Details


Os.11621.1.S1_at

Description gb:CB625492
DB_XREF= gi:29620481
DB_XREF=OSIIEa14M03.r
CLONE=OSIIEa14M03
TID=Os.11621.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11621 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:P46032 (A.thaliana) PT2B_ARATH Peptide transporter PTR2-B
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1324011/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11621.1.S1_at--528--5191Chr03:7118764..7118788 (25 bp)
GCAATGCTATCTGCAGCTCTTGTTG
LOC_Os03g13240
Os.11621.1.S1_at--440--4951Chr03:7118673..7118697 (25 bp)
GCATTCTTTGGCAAATACCGCAGTA
LOC_Os03g13240
Os.11621.1.S1_at--847--1191Chr03:7118652..7118676 (25 bp)
AGTATTTCTTGGTTGGCGCTGCTGA
LOC_Os03g13240
Os.11621.1.S1_at--557--6071Chr03:7118567..7118591 (25 bp)
GAGTTTGTGTAGTGCATTTGCGCTT
LOC_Os03g13240
Os.11621.1.S1_at--249--10291Chr03:7118551..7118575 (25 bp)
TTTGCGCTTGTAACAGTCTCACTGG
LOC_Os03g13240
Os.11621.1.S1_at--305--4831Chr03:7118514..7118538 (25 bp)
GCTCAATCATATTAACCTTGGTGTC
LOC_Os03g13240
Os.11621.1.S1_at--953--8551Chr03:7118462..7118486 (25 bp)
TGGATGGATCCCAGATAACCTGAAT
LOC_Os03g13240
Os.11621.1.S1_at--45--671Chr03:7118439..7118463 (25 bp)
ATGAAGGCCACCTAGATCGGTTCTT
LOC_Os03g13240
Os.11621.1.S1_at--50--6411Chr03:7118425..7118449 (25 bp)
GATCGGTTCTTTTCATTGATTGCTG
LOC_Os03g13240
Os.11621.1.S1_at--617--6591Chr03:7118408..7118432 (25 bp)
GATTGCTGGGATCAACTTTGTGAAT
LOC_Os03g13240
Os.11621.1.S1_at--270--191Chr03:7118385..7118409 (25 bp)
ATTTACTGGTTTTCACTGGTTGTGC
LOC_Os03g13240
Target Sequence 
GCAATGCTATCTGCAGCTCTTGTTGAGTTGAGGCGTTTAGNGATCGCCAGATCTGAAGGTCTTATTCATGAGGNATGTTG
CTGTTCCGATGAGCATTCTTTGGCAAATACCGCAGTATTTCTTGGTTGGCGCTGCTGAGGTCTTTGCTGNCCATAGGTCA
GNTTGAGTTCTTCTACANATGAAGCCCCTGATGCCANTGAGGAGTTTGTGTAGTGCATTTGCGCTTGTAACAGTCTCACT
GGGGAGCTATTTAAGCTCAATCATATTAACCTTGGTGTCATATTTTACAACTCAAGGAGGGGATCCTGGATGGATCCCAG
ATAACCTGAATGAAGGCCACCTAGATCGGTTCTTTTCATTGATTGCTGGGATCAACTTTGTGAATTTACTGGTTTTCACT
GGTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis