Browse Element(s) Details


Os.11639.1.S1_at

Description gb:AK072729.1
DB_XREF= gi:32982752
TID=Os.11639.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141N24, full insert sequence.
FL= gb:AK120946.1 gb:AK072729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0513011/11Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05090Os.3582.1.S1_at8/116+2246874..2249858protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100Os.10585.1.A1_at11/116+2249560..22556271-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100Os.10585.1.A1_x_at11/116+2249560..22556271-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110Os.3583.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110OsAffx.4726.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120OsAffx.15270.1.S1_at9/116+2261968..2262878hypothetical protein
LOC_Os06g05120Os.46584.1.S1_x_at2/116+2261968..2262878hypothetical protein
LOC_Os06g05130Os.11639.1.S1_at11/116+2273699..2278508Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140OsAffx.4727.1.S1_at11/116+2281573..2283864pentatricopeptide, putative
LOC_Os06g05150Os.38154.1.A1_at10/116+2284929..2285795expressed protein
LOC_Os06g05150OsAffx.15271.1.S1_at6/116+2284929..2285795expressed protein
LOC_Os06g05160Os.27076.1.S1_at10/116+2291601..2297802sulfate transporter 3.4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009536cellular_componentplastid
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11639.1.S1_at--749--5591Chr06:2277935..2277959 (25 bp)
GAAATTTGGCATGCCGAGCCTGGGT
LOC_Os06g05130
Os.11639.1.S1_at--240--4991Chr06:2277943..2277967 (25 bp)
GCATGCCGAGCCTGGGTTTTGTGAT
LOC_Os06g05130
Os.11639.1.S1_at--5--4511Chr06:2277947..2277971 (25 bp)
GCCGAGCCTGGGTTTTGTGATGCAC
LOC_Os06g05130
Os.11639.1.S1_at--406--2791Chr06:2278153..2278177 (25 bp)
AAGAGTGGCCGCAGTTGCTTATCAC
LOC_Os06g05130
Os.11639.1.S1_at--3--4531Chr06:2278160..2278184 (25 bp)
GCCGCAGTTGCTTATCACACAGGAT
LOC_Os06g05130
Os.11639.1.S1_at--644--5031Chr06:2278163..2278187 (25 bp)
GCAGTTGCTTATCACACAGGATGAT
LOC_Os06g05130
Os.11639.1.S1_at--589--5051Chr06:2278286..2278310 (25 bp)
GCAGCAGAGATATTACAATCGACAT
LOC_Os06g05130
Os.11639.1.S1_at--857--7071Chr06:2278324..2278348 (25 bp)
GTAATACTAATTTAGCCCAGGTGGT
LOC_Os06g05130
Os.11639.1.S1_at--186--171Chr06:2278333..2278357 (25 bp)
ATTTAGCCCAGGTGGTTTGTGTGTG
LOC_Os06g05130
Os.11639.1.S1_at--107--7031Chr06:2278391..2278415 (25 bp)
GTACATTCTTGCCATCTTTTTCTTA
LOC_Os06g05130
Os.11639.1.S1_at--895--3631Chr06:2278398..2278422 (25 bp)
CTTGCCATCTTTTTCTTATTAATTG
LOC_Os06g05130
Target Sequence 
GAAATTTGGCATGCCGAGCCTGGGTTTTGTGATGCACNCAGCACACATTCAGATTTGAAGATTGAGAGATGCTTCTTATT
GGCNAGCTTGTTCAGAAAGATGACTAANGCGGTTTGGGATAAAATCAGCTGATTGGGAAACATTAGCAGGATGATAAGCA
TGACTGGTGGTACCAATGAAAAGGGTTGAAATCCTTTGCATTGTTCATTTGTTGTGGAGCAAGAGTGGCCGCAGTTGCTT
ATCACACAGGATGATGGAGGTGTTTGTGTGAAGCTTATTGCTGAAGCTGGATTGTTTTTGACCTGTGTTTCTAAAAGAAA
AGGGAAAAGAAGAAGCTGTGGATTGAGGCCGGAGCAGCAGAGATATTACAATCGACATAGATAAATAAGATGTAATACTA
ATTTAGCCCAGGTGGTTTGTGTGTGGAGATGCAATCCATTGTAGTAACAGCCTAACTTGTACATTCTTGCCATCTTTTTC
TTATTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis