Browse Element(s) Details


Os.11655.1.S1_at

Description gb:AK100046.1
DB_XREF= gi:32985255
TID=Os.11655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153P10, full insert sequence.
FL= gb:AK100046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0390011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11655.1.S1_at--374--8991Chr03:1755359..1755383 (25 bp)
TGAAGTTCATGCAGTGGAGTCCACG
LOC_Os03g03900
Os.11655.1.S1_at--81--7531Chr03:1755324..1755347 (24 bp)
GTGGAGCTGTATGCCTTTTGTTCAG
LOC_Os03g03900
Os.11655.1.S1_at--955--6531Chr03:1755186..1755210 (25 bp)
GATTTAGCAGTCAGTTACAGTTCAA
LOC_Os03g03900
Os.11655.1.S1_at--311--7691Chr03:1755143..1755167 (25 bp)
GGGTTTCATCTGACTCAATAGTTCT
LOC_Os03g03900
Os.11655.1.S1_at--1--7431Chr03:1755115..1755139 (25 bp)
GTGTTCACTTCAAGGTTTCAGCATT
LOC_Os03g03900
Os.11655.1.S1_at--45--3411Chr03:1755097..1755121 (25 bp)
CAGCATTTGAAAGCCTGCCTCAGGT
LOC_Os03g03900
Os.11655.1.S1_at--622--1011Chr03:1755076..1755100 (25 bp)
AGGTTACCCGTTACAGCGTGTCTGT
LOC_Os03g03900
Os.11655.1.S1_at--715--7171Chr03:1755057..1755081 (25 bp)
GTCTGTTCAGCCTTCATGGGAGCAT
LOC_Os03g03900
Os.11655.1.S1_at--733--731Chr03:1754923..1755041 (25 bp)
ATGTCTTCCCACCAGTAAGCGAAAG
LOC_Os03g03900
Os.11655.1.S1_at--314--4051Chr03:1754766..1754790 (25 bp)
CGATGTTGCTCGTGTAAACCTGCTC
LOC_Os03g03900
Os.11655.1.S1_at--938--9811Chr03:1754752..1754776 (25 bp)
TAAACCTGCTCTTTTACGGGTGAAG
LOC_Os03g03900
Target Sequence 
TGAAGTTCATGCAGTGGAGTCCACGGGAATAGAAGGTGGAGCTGTATGCCTTTTGTTCAGTTTCATAACCATAGGAACTT
TGTGTAGGCAGACTAAACTAGTGTACATAATTGTAGGTGAGTAGGTCAGAGGATGAAAATAATTGGCATTTGTCGAAATG
AAGCTTTGGGATAGATTTAGCAGTCAGTTACAGTTCAAAAGTTTGTAGCTCTTTTGGGGTTTCATCTGACTCAATAGTTC
TCAAGTGTTCACTTCAAGGTTTCAGCATTTGAAAGCCTGCCTCAGGTTACCCGTTACAGCGTGTCTGTTCAGCCTTCATG
GGAGCATTTTTGCAATTCTGAAATGTCTTCCCACCAGTAAGCGAAAGGGTTCACAAGAAAGCAGTTGCAGTGCTGGCAAT
GAAACAAGATCATCATCAAAGTCGAGATGAATTCTGTTGTTTTTAGATCAGTGTTAGCATTATTGTTAATACAATGTTAT
TTATATGTTTGAGTAGTTTCGATGTTGCTCGTGTAAACCTGCTCTTTTACGGGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis