Browse Element(s) Details


Os.11673.2.S1_x_at

Description gb:CB630660
DB_XREF= gi:29625649
DB_XREF=OSIIEb07L13.r
CLONE=OSIIEb07L13
TID=Os.11673.2
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.11673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.22 (P0490D09.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5678011/11Plus-3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed
LOC_Os01g56810Os.33309.1.S1_at9/111+33115336..33119595Cytokinin dehydrogenase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11673.2.S1_x_at--1042--2511Chr01:33086699..33086723 (25 bp)
AACTTGCCAAGTAGATTCTCGCTTT
LOC_Os01g56780
Os.11673.2.S1_x_at--733--111Chr01:33086685..33086709 (25 bp)
ATTCTCGCTTTGTATCCAACCATGA
LOC_Os01g56780
Os.11673.2.S1_x_at--969--671Chr01:33086512..33086688 (25 bp)
ATGACTTCCACCAGGATGAGCTGAA
LOC_Os01g56780
Os.11673.2.S1_x_at--1013--3391Chr01:33086368..33086392 (25 bp)
CAGCTCCAGATGACAGATGCCAACA
LOC_Os01g56780
Os.11673.2.S1_x_at--454--10731Chr01:33086322..33086346 (25 bp)
TTGCTTGCCTCTGGTCTGAAAACGC
LOC_Os01g56780
Os.11673.2.S1_x_at--174--2431Chr01:33086304..33086328 (25 bp)
AAAACGCCAGCGATGCAAGCATCAT
LOC_Os01g56780
Os.11673.2.S1_x_at--165--9611Chr01:33086283..33086307 (25 bp)
TCATCACTACCGGTCAGGCTAATTA
LOC_Os01g56780
Os.11673.2.S1_x_at--425--8751Chr01:33086248..33086272 (25 bp)
TGTACTGCTGGGATTGCTATCCCCA
LOC_Os01g56780
Os.11673.2.S1_x_at--108--5971Chr01:33086203..33086227 (25 bp)
GAGAAATCAGGCTGCCGTTTCGTGC
LOC_Os01g56780
Os.11673.2.S1_x_at--503--7291Chr01:33086182..33086206 (25 bp)
GTGCCGTGGCGTAAGCAGCTTGTAT
LOC_Os01g56780
Os.11673.2.S1_x_at--80--10231Chr01:33086084..33086108 (25 bp)
TATTGCTCATCCTATCTGCTGTAAA
LOC_Os01g56780
Target Sequence 
AACTTGCCAAGTAGATTCTCGCTTTGTATCCAACCATGACTTCCACCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCA
TGAAGAGTGGCTGGAAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGANCTGCTTCGTTTTTGAAAC
GGAAAAGGCACAGACGCCCCAGCTCCAGATGACAGATGCCAACATCAATTNACAGAGNTTTTTCTCTTGCTTGCCTCTGG
TCTGAAAACGCCAGCGATGCAAGCATCATCACTACCGGTCAGGCTAATTAAGTTCTGCACNTGTACTGCTGGGATTGCTA
TCCCCACNGGTTGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTATTGTATTT
TAAGTACACGATTTGACGATTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTNNTTATTGCTCATCCTA
TCTGCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11673.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis