Browse Element(s) Details


Os.11699.1.S1_at

Description gb:AK109357.2
DB_XREF= gi:42821674
TID=Os.11699.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A07, full insert sequence.
FL= gb:AK109357.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4732010/11T-complex protein 1, eta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed
LOC_Os06g47300Os.27428.1.S1_at11/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47300OsAffx.13466.1.S1_at1/116+28669241..28673824RNA-binding protein, putative, expressed
LOC_Os06g47310OsAffx.28147.1.S1_at2/116+28678748..28679747uncharacterized plant-specific domain TIGR01627 family protein
LOC_Os06g47320Os.11699.1.S1_at10/116+28681054..28686080T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330Os.14107.1.S1_at11/116+28687839..28693004EH-domain containing protein 2, putative, expressed
LOC_Os06g47340Os.425.1.S1_s_at11/116+28693933..28697428glycosyltransferase, putative, expressed
LOC_Os06g47350Os.9229.3.S1_x_at11/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350Os.9229.2.S1_x_at10/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47360OsAffx.15971.1.S1_x_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360OsAffx.15971.1.S1_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370NANA6+28709015..28711976retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11699.1.S1_at--797--6271Chr06:28682346..28682370 (25 bp)
GATGTACTCAATAAGCTCCGACAGA
LOC_Os06g47320
Os.11699.1.S1_at--643--10671Chr06:28682121..28682145 (25 bp)
TTGCTAACTTTGTCTGGGAACCTGC
LOC_Os06g47320
Os.11699.1.S1_at--791--3631Chr06:28681977..28682001 (25 bp)
CTTGCCTTATTCTCAGCGTGGATGA
LOC_Os06g47320
Os.11699.1.S1_at--21--2271NONE
AAATCCCAAGTCTGAAAGTGCGCAA
NONE
Os.11699.1.S1_at--257--451Chr06:28681283..28681307 (25 bp)
ATCTACGCCACGTTTGTTTAGCTTC
LOC_Os06g47320
Os.11699.1.S1_at--834--1551Chr06:28681264..28681288 (25 bp)
AGCTTCGTCGCTCGTGTGGTTTAAA
LOC_Os06g47320
Os.11699.1.S1_at--564--10271Chr06:28681224..28681248 (25 bp)
TTTGCAGTCTGCTCTTTATCGAAGT
LOC_Os06g47320
Os.11699.1.S1_at--144--10371Chr06:28681200..28681224 (25 bp)
TTTTTCGTGACGCTACATGCATGCC
LOC_Os06g47320
Os.11699.1.S1_at--243--611Chr06:28681180..28681204 (25 bp)
ATGCCCTGCTCGATGTATTTCCAAT
LOC_Os06g47320
Os.11699.1.S1_at--871--10671Chr06:28681162..28681186 (25 bp)
TTCCAATTGTGCTTGTCAGATTCGT
LOC_Os06g47320
Os.11699.1.S1_at--293--6251Chr06:28681114..28681138 (25 bp)
GATGGTTGCCTACTAGCTTTTGTAA
LOC_Os06g47320
Target Sequence 
GATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAAT
TGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTGAAGCTGCTT
GCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATG
GCTGGCCGTGGCGGAGGAGCGATGCGGGGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATCAATCTACGCCACGTTTGT
TTAGCTTCGTCGCTCGTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCT
ACATGCATGCCCTGCTCGATGTATTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGGTTG
CCTACTAGCTTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis