Browse Element(s) Details


Os.11702.1.S1_at

Description gb:AK122001.1
DB_XREF= gi:37991624
TID=Os.11702.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110J06, full insert sequence.
FL= gb:AK122001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3190011/11CG-1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31880NANA4+18897066..18898996hypothetical protein
LOC_Os04g31890OsAffx.9790.1.S1_x_at1/114+18902070..18903500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g31890OsAffx.21264.1.S1_x_at1/114+18902070..18903500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g31900Os.11702.1.S1_at11/114+18918517..18926150CG-1 domain containing protein, expressed
LOC_Os04g31910OsAffx.27508.131.S1_s_at11/114+18926496..18929443expressed protein
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11702.1.S1_at--545--2911Chr04:18925149..18925173 (25 bp)
AAGGACATGGTCTACGTGGCTTCCG
LOC_Os04g31900
Os.11702.1.S1_at--198--1911Chr04:18925162..18925186 (25 bp)
ACGTGGCTTCCGAGCTGAGCAAACA
LOC_Os04g31900
Os.11702.1.S1_at--476--5391Chr04:18925247..18925271 (25 bp)
GAAGCAGTCAAAGTGTTCCGCCGAC
LOC_Os04g31900
Os.11702.1.S1_at--503--1111Chr04:18925258..18925282 (25 bp)
AGTGTTCCGCCGACAGAAGGTTGAT
LOC_Os04g31900
Os.11702.1.S1_at--359--5251Chr04:18925283..18925307 (25 bp)
GAATCTGTCAAGGAGGCTATGTCAA
LOC_Os04g31900
Os.11702.1.S1_at--442--8731Chr04:18925302..18925326 (25 bp)
TGTCAAGAGTACTGTCCATGGTGGA
LOC_Os04g31900
Os.11702.1.S1_at--602--8991Chr04:18925872..18925896 (25 bp)
TGAAGCGGCATCAACACTCGACAAT
LOC_Os04g31900
Os.11702.1.S1_at--902--1471Chr04:18925909..18925933 (25 bp)
AGAATCGACGACTTCATGCACTGAA
LOC_Os04g31900
Os.11702.1.S1_at--604--7571Chr04:18925951..18925975 (25 bp)
GGGCGATCACGGAGCTGTCTACAGT
LOC_Os04g31900
Os.11702.1.S1_at--673--8931Chr04:18926009..18926033 (25 bp)
TGACCTGATAGTGTTCCGTTTGTAC
LOC_Os04g31900
Os.11702.1.S1_at--314--6251Chr04:18926045..18926069 (25 bp)
GATGGATCTATCTAATGTTCTGAGT
LOC_Os04g31900
Target Sequence 
AAGGACATGGTCTACGTGGCTTCCGAGCTGAGCAAACAGCAATGGCTGAAGCAGAAGAGGATGACGAGGATGATGATGAT
GACGACTTCAATGATGATGAAGCAGTCAAAGTGTTCCGCCGACAGAAGGTTGATGAATCTGTCAAGGAGGCTATGTCAAG
AGTACTGTCCATGGTGGACTCTCCTNAAGCAAGGATGCAATATCGTCGAATGCTTGAGGAATTTCGACAAGCCACTGNTG
AATAGGGTGCATCAGATGAAGCGGCATCAACACTCGACAATGATTTACTAACAAGAATCGACGACTTCATGCACTGAAAC
AATGCATCAGACAAGGGGCGATCACGGAGCTGTCTACAGTTAATTAGGAAATAGATAGTCTGCAGCTAATTTATGACCTG
ATAGTGTTCCGTTTGTACAGTCTTTGCNTGATGGATCTATCTAATGTTCTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis