Browse Element(s) Details


Os.11708.1.S1_at

Description gb:AK070370.1
DB_XREF= gi:32980394
TID=Os.11708.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049F22, full insert sequence.
FL= gb:AK070370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1065011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10620Os.11186.1.S1_at11/113+5401321..5405247hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g10630OsAffx.12810.1.S1_at9/113+5410221..5411099hypothetical protein
LOC_Os03g10640Os.50449.1.S1_at11/113+5413028..5419439Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g10650Os.11708.1.S1_at11/113+5420861..5423342Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g10660NANA3+5426394..5426609hypothetical protein
LOC_Os03g10670Os.11426.2.S1_x_at1/113+5432527..5432937hypothetical protein
LOC_Os03g10680Os.50397.1.S1_at11/113+5437214..5441439transposon protein, putative, unclassified, expressed
LOC_Os03g10689NANA3+5443201..5443393NA
LOC_Os03g10700Os.42235.1.S1_x_at1/113+5445904..5447548expressed protein
LOC_Os03g10700Os.42235.1.S1_at1/113+5445904..5447548expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11708.1.S1_at--484--5651Chr03:5421479..5421503 (25 bp)
GACAGCATGTTGGTTGGAGTCCAGC
LOC_Os03g10650
Os.11708.1.S1_at--733--8031Chr03:5421464..5421488 (25 bp)
GGAGTCCAGCTCTGCAATTTTTAGT
LOC_Os03g10650
Os.11708.1.S1_at--852--172Chr01:21956586..21956924 (25 bp)
ATTTTTAGTTGATCATTTTCACCCT
NONE
Os.11708.1.S1_at--962--10251Chr03:5421417..5421441 (25 bp)
TTTGTTTCAGCTGAGCCCTAGTCAG
LOC_Os03g10650
Os.11708.1.S1_at--787--4531Chr03:5421403..5421427 (25 bp)
GCCCTAGTCAGTGCTCTTGCAAGTT
LOC_Os03g10650
Os.11708.1.S1_at--536--6571Chr03:5421343..5421367 (25 bp)
GATTCTTCTTCTGATTATGCAATTG
LOC_Os03g10650
Os.11708.1.S1_at--629--6791Chr03:5421280..5421304 (25 bp)
GTTTTGTGGAGATCTTTCCCTGGCC
LOC_Os03g10650
Os.11708.1.S1_at--98--10651Chr03:5421265..5421289 (25 bp)
TTCCCTGGCCCAGAAAGGTACTAGT
LOC_Os03g10650
Os.11708.1.S1_at--1147--5891Chr03:5421204..5421228 (25 bp)
GAGCTCTTGCTCAAAGTAGGGAGGA
LOC_Os03g10650
Os.11708.1.S1_at--806--6191Chr03:5421184..5421208 (25 bp)
GAGGAAGTCCTCACTGAGATGTGGA
LOC_Os03g10650
Os.11708.1.S1_at--464--2651Chr03:5421033..5421057 (25 bp)
AAGCCAAACAGTGGTAGTACATTTT
LOC_Os03g10650
Target Sequence 
GACAGCATGTTGGTTGGAGTCCAGCTCTGCAATTTTTAGTTGATCATTTTCACCCTNTTTTCTTTTGTTTCAGCTGAGCC
CTAGTCAGTGCTCTTGCAAGTTCAGGGGGGGTTGGCCAAATGGAGGGGCCAACATTTGATTCTTCTTCTGATTATGCAAT
TGTTACAGTTGATTGATTAGTTAGCAATGGAAAGATTCTGGTTTTGTGGAGATCTTTCCCTGGCCCAGAAAGGTACTAGT
GTAAAGAGCAGAGGAAAAGGCCTGAAAACTGATAAAGAGCTCTTGCTCAAAGTAGGGAGGAAGTCCTCACTGAGATGTGG
AGACAGAGAGAGGGAATCCCAATTCCCAAGTATTGAGTAGAAGTCATTTTTTGTGGATANNNNANNGNNANNNNNTANNN
NNNGNNNNNNNNNNCCANNTTNGTNCNTTAGCAATTTCCTGATGCTAAAGCCAAACAGTGGTAGTACATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis