Browse Element(s) Details


Os.11709.1.S2_at

Description gb:AY062272.1
DB_XREF= gi:20268667
TID=Os.11709.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11709 (NCBI UniGene Cluster)
DEF=Oryza sativa Dek1-calpain-like protein mRNA, complete cds.
PROD=Dek1-calpain-like protein
FL= gb:AK064381.1 gb:AY062272.1 gb:AK072218.1 gb:AK121261.1 gb:AK121875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4797011/11calpain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47980Os.51734.1.S1_x_at11/112+29358233..29359562uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os02g47990OsAffx.25007.2.S1_at1/112+29360332..29361301retrotransposon protein, putative, LINE subclass
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11709.1.S2_at--554--5191Chr02:29351525..29351549 (25 bp)
GCAATATGCCGGTACCTGGGAGATA
LOC_Os02g47970
Os.11709.1.S2_at--545--3411Chr02:29351555..29351579 (25 bp)
CAGCAGCTCTGCTCTTGAACCTGAA
LOC_Os02g47970
Os.11709.1.S2_at--469--7591Chr02:29351586..29351610 (25 bp)
GGGCTTCATCAGACGCTACATGCAA
LOC_Os02g47970
Os.11709.1.S2_at--601--1551Chr02:29351618..29351642 (25 bp)
AGCTTGATTGCTTCCTAACGTGACA
LOC_Os02g47970
Os.11709.1.S2_at--1072--10751Chr02:29351694..29351718 (25 bp)
TTGATCGCCGTGCATGACTCTGGAT
LOC_Os02g47970
Os.11709.1.S2_at--1024--7991Chr02:29351715..29351739 (25 bp)
GGATGTTTTCTAGTCGATGCTTGTA
LOC_Os02g47970
Os.11709.1.S2_at--46--9811Chr02:29351755..29351779 (25 bp)
TAACATTTAGACCTGGTAGCCCCAT
LOC_Os02g47970
Os.11709.1.S2_at--231--551Chr02:29351778..29351802 (25 bp)
ATCCCGTGTATAGGTATCCCATGTC
LOC_Os02g47970
Os.11709.1.S2_at--355--7491Chr02:29351840..29351864 (25 bp)
GTGGTGTCGTTTCCTGTTAGCGAAA
LOC_Os02g47970
Os.11709.1.S2_at--414--4991Chr02:29351899..29351923 (25 bp)
GCATGCTGCAGTTTTGCTGATCAAG
LOC_Os02g47970
Os.11709.1.S2_at--1139--7171Chr02:29351934..29351958 (25 bp)
GTCGGCCATAGCGTTTTCATTGATT
LOC_Os02g47970
Target Sequence 
GCAATATGCCGGTACCTGGGAGATATGAAGCAGCAGCTCTGCTCTTGAACCTGAANATTCTGGGCTTCATCAGACGCTAC
ATGCAACCGCATAAGCTTGATTGCTTCCTAACGTGACAGGAAAGGCAATCTTTCTNNGTCAGCAGGCATGGTGTTNATAC
ATCAGAATCATTTGATCGCCGTGCATGACTCTGGATGTTTTCTAGTCGATGCTTGTAGATAGTGGTGGCAACTAACATTT
AGACCTGGTAGCCCCATCCCGTGTATAGGTATCCCATGTCACCGTGTACATACTATAGAATTAGATGAGTTAACCTTGTG
GTGTCGTTTCCTGTTAGCGAAATAGAGCTCTTGTGCAGCTGGGAAATACCATTTTAGCATGCTGCAGTTTTGCTGATCAA
GGCGAGCAGTCGTCGGCCATAGCGTTTTCATTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11709.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis