Browse Element(s) Details


Os.11715.2.S1_x_at

Description gb:AK060859.1
DB_XREF= gi:32970877
TID=Os.11715.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F07, full insert sequence.
FL= gb:AK060859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0588011/11U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed
LOC_Os08g05900OsAffx.29056.1.S1_at11/118+3169173..3169640hypothetical protein
LOC_Os08g05910Os.7458.1.S1_a_at11/118+3175990..3184094Nitrate/chlorate transporter, putative, expressed
LOC_Os08g05920Os.45902.1.A1_x_at4/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920Os.56372.1.S1_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920OsAffx.10222.1.S1_x_at1/118+3186045..3190276retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0005730cellular_componentnucleolus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0015030cellular_componentCajal body
GO:0016363cellular_componentnuclear matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11715.2.S1_x_at--622--10231Chr08:3161161..3161185 (25 bp)
TATTGTCAAGCATCTCTTTCCAGTG
LOC_Os08g05880
Os.11715.2.S1_x_at--747--10291Chr08:3161145..3161169 (25 bp)
TTTCCAGTGCCAAAGCCAGATTCAA
LOC_Os08g05880
Os.11715.2.S1_x_at--755--7951Chr08:3161117..3161141 (25 bp)
GGATAATTACTTTCGCTAACAGAGA
LOC_Os08g05880
Os.11715.2.S1_x_at--623--2091Chr08:3160984..3161111 (25 bp)
ACATCTCATTCAGGCATCACGTATA
LOC_Os08g05880
Os.11715.2.S1_x_at--826--2491Chr08:3160954..3160978 (25 bp)
AACATGGTGGCCCAAAATCCCTTGA
LOC_Os08g05880
Os.11715.2.S1_x_at--63--1771Chr08:3160930..3160954 (25 bp)
ACCTGAAGGAGGTTGGCCCTCGATT
LOC_Os08g05880
Os.11715.2.S1_x_at--603--2551Chr08:3160786..3160810 (25 bp)
AACTGTCGACCAAGCGGAGGCGCAA
LOC_Os08g05880
Os.11715.2.S1_x_at--825--2571Chr08:3160761..3160785 (25 bp)
AACGAGTTTGTGCTACGGCCATACA
LOC_Os08g05880
Os.11715.2.S1_x_at--943--10311Chr08:3160649..3160673 (25 bp)
TTTCATCCTTGTAACGTTAGCTCAG
LOC_Os08g05880
Os.11715.2.S1_x_at--78--571Chr08:3160612..3160636 (25 bp)
ATCCTGCTGTGATAATGGTTCCATC
LOC_Os08g05880
Os.11715.2.S1_x_at--56--2971Chr08:3160503..3160527 (25 bp)
AATGGCAGCCCACATCATGCAAGAT
LOC_Os08g05880
Target Sequence 
TATTGTCAAGCATCTCTTTCCAGTGCCAAAGCCAGATTCAAAACGGATAATTACTTTCGCTAACAGAGATGANTACATCT
CATTCAGGCATCACGTATATGAAAAACATGGTGGCCCAAAATCCCTTGACCTGAAGGAGGTTGGCCCTCGATTCGAGTTG
CGANTATATCAGATCAAGCGAGGAACTGTCGACCAAGCGGAGGCGCAAAACGAGTTTGTGCTACGGCCATACATGAACAC
AGCGAAGAAGCAAAAATCTCTTGGTGCNTGATTAGCCTGCAAGGNTGCAANTGCTGTAGTACATCAATTTTGAGTTTNTG
TTTCATCCTTGTAACGTTAGCTCAGTGTGTNTAATGTATCCTGCTGTGATAATGGTTCCATCGAAATAGTTANTGGGTCC
AATTTGTTGGATTGTTTTTACACNTNTGCTGTGGATTGGGGCCCAATAACGGCCAATTTTTGTAGAAATGGCAGCCCACA
TCATGCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11715.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis