Browse Element(s) Details


Os.11718.1.S1_at

Description gb:AK072692.1
DB_XREF= gi:32982715
TID=Os.11718.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140I22, full insert sequence.
FL= gb:AK072692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0298011/11GDA1/CD39 family protein, expressed
LOC_Os11g032306/11GDA1/CD39 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02980Os.11718.1.S1_at11/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.11908.1.S1_s_at4/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.1.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.2.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02990OsAffx.7467.1.S1_at11/1112+1111362..1111955hypothetical protein
LOC_Os12g03000Os.31312.2.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03000Os.31312.5.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03010NANA12+1119567..1125722retrotransposon protein, putative, unclassified
LOC_Os12g03020Os.14491.2.S1_x_at2/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03020Os.47463.1.S1_x_at1/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03030Os.15801.1.S1_x_at3/1112+1129909..1132442hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11718.1.S1_at--68--6772Chr12:1108843..1108867 (25 bp)
GTAGAATACCCCAACGTTCGTGATC
LOC_Os12g02980
Os.11718.1.S1_at--66--2592Chr12:1108855..1108879 (25 bp)
AACGTTCGTGATCATGCCTACTTAT
LOC_Os12g02980
Os.11718.1.S1_at--63--6432Chr12:1108885..1108909 (25 bp)
GATCTTATCTACGAATACTCCTTGC
LOC_Os12g02980
Os.11718.1.S1_at--544--3092Chr12:1108898..1108922 (25 bp)
AATACTCCTTGCTCGTTGACGGCTT
LOC_Os12g02980
Os.11718.1.S1_at--845--1912Chr12:1108916..1109096 (25 bp)
ACGGCTTCGGTCTACATCCAAGTAA
LOC_Os12g02980
Os.11718.1.S1_at--39--7452Chr12:1109179..1109203 (25 bp)
GTGTCACCCAAAAAACGGCTTCGAG
LOC_Os12g02980
Os.11718.1.S1_at--12--531Chr12:1109272..1109296 (25 bp)
ATCGATGTCTGTGTGCTGGTTATTA
LOC_Os12g02980
Os.11718.1.S1_at--366--911Chr12:1109363..1109387 (25 bp)
AGGCGGCCATGCTCTTTGTCCTAGA
LOC_Os12g02980
Os.11718.1.S1_at--1013--8691Chr12:1109379..1109403 (25 bp)
TGTCCTAGACTCCAAGTTGTGTATG
LOC_Os12g02980
Os.11718.1.S1_at--893--692Chr12:1109475..1109499 (25 bp)
ATGAGCACGCATGTCTTGTATGTAA
LOC_Os12g02980
Os.11718.1.S1_at--113--5732Chr12:1109502..1109526 (25 bp)
GACTGAACATCTGGTGCACATTTGA
LOC_Os12g02980
Target Sequence 
GTAGAATACCCCAACGTTCGTGATCATGCCTACTTATGCATGGATCTTATCTACGAATACTCCTTGCTCGTTGACGGCTT
CGGTCTACATCCAAGTAAGGAGATAACGCTGGTAGACAAGGTGAAGCATGGGGAGTACTACATTGACGCGGCTTGGCCAT
TGGGTACAGCTATTGAAGCTGTGTCACCCAAAAAACGGCTTCGAGAAATATACAAATGATCTTGAGATCGATGTACTAGC
TACTTTGGAAGTTAGGATATCGATTGTTGTATGATCGATGTCTGTGTGCTGGTTATTACAGTATAACTGAGTATCATGAT
ATATAAGTAGTATGTTAATAATGGGTCGAGCTATCAATAGATCGAGGCGGCCATGCTCTTTGTCCTAGACTCCAAGTTGT
GTATGTTTGAATATATAGCAGCTTTCTATATATAATTACGTACTATCACAGAAATCATCGGTTGTGTTTGTGTGTCATGA
GCACGCATGTCTTGTATGTAAAAGACTGAACATCTGGTGCACATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis