Browse Element(s) Details


OsAffx.7467.1.S1_at

Description tigr:9640.m00207
TID=OsAffx.7467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0299011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02980Os.11718.1.S1_at11/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.11908.1.S1_s_at4/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.1.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.2.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02990OsAffx.7467.1.S1_at11/1112+1111362..1111955hypothetical protein
LOC_Os12g03000Os.31312.2.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03000Os.31312.5.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03010NANA12+1119567..1125722retrotransposon protein, putative, unclassified
LOC_Os12g03020Os.14491.2.S1_x_at2/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03020Os.47463.1.S1_x_at1/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03030Os.15801.1.S1_x_at3/1112+1129909..1132442hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7467.1.S1_at--829--3652Chr12:1111901..1111925 (25 bp)
CTTTTCAGCATGCTCATATGTGAAA
LOC_Os12g02990
OsAffx.7467.1.S1_at--1109--9652Chr12:1111897..1111921 (25 bp)
TCAGCATGCTCATATGTGAAACATG
LOC_Os12g02990
OsAffx.7467.1.S1_at--92--7371Chr12:1111882..1111906 (25 bp)
GTGAAACATGCTCATATGTGAAACC
LOC_Os12g02990
OsAffx.7467.1.S1_at--141--2112Chr12:1111877..1111901 (25 bp)
ACATGCTCATATGTGAAACCACCTA
LOC_Os12g02990
OsAffx.7467.1.S1_at--150--4832Chr12:1111873..1111897 (25 bp)
GCTCATATGTGAAACCACCTAACTG
LOC_Os12g02990
OsAffx.7467.1.S1_at--511--8672Chr12:1111866..1111890 (25 bp)
TGTGAAACCACCTAACTGTATTATT
LOC_Os12g02990
OsAffx.7467.1.S1_at--122--5552Chr12:1111863..1111887 (25 bp)
GAAACCACCTAACTGTATTATTAAT
LOC_Os12g02990
OsAffx.7467.1.S1_at--394--3732Chr12:1111855..1111879 (25 bp)
CTAACTGTATTATTAATGGCCCTGT
LOC_Os12g02990
OsAffx.7467.1.S1_at--1135--3852Chr12:1111851..1111875 (25 bp)
CTGTATTATTAATGGCCCTGTTATA
LOC_Os12g02990
OsAffx.7467.1.S1_at--639--132Chr12:1111844..1111868 (25 bp)
ATTAATGGCCCTGTTATATCATACA
LOC_Os12g02990
OsAffx.7467.1.S1_at--1048--2952Chr12:1111841..1111865 (25 bp)
AATGGCCCTGTTATATCATACACTA
LOC_Os12g02990
Target Sequence 
CTTTTCAGCATGCTCATATGTGAAACATGCTCATATGTGAAACCACCTAACTGTATTATTAATGGCCCTGTTATATCATA
CACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis