Browse Element(s) Details


Os.11750.1.A1_at

Description gb:CB649212
DB_XREF= gi:29644205
DB_XREF=OSJNEb13A10.r
CLONE=OSJNEb13A10
TID=Os.11750.1
CNT=56
FEA=FLmRNA
TIER=Stack
STK=22
UG=Os.11750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-C05, full insert sequence
FL= gb:AK058547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0323011/11Nodule membrane protein, putative, expressed
LOC_Os03g115801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03200Os.18338.1.S1_at11/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03200OsAffx.16839.1.S1_at1/112+1263503..1266099FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03210NANA2+1273228..1275549FAD-binding domain-containing protein, putative, expressed
LOC_Os02g03220Os.51980.1.S1_at11/112+1283155..1288182expressed protein
LOC_Os02g03220Os.49499.1.S1_at2/112+1283155..1288182expressed protein
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed
LOC_Os02g03240Os.41695.3.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.2.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.5.S1_x_at2/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.4.S1_x_at1/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03250Os.51258.1.S1_at11/112+1302273..1304317expressed protein
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11750.1.A1_at--391--3211Chr02:1289539..1289563 (25 bp)
CAAGGTTCCTTGTGCTCGGTGGAGC
LOC_Os02g03230
Os.11750.1.A1_at--901--9091Chr02:1289511..1289535 (25 bp)
TGCTCTGGCTTGCACTCTTGATCAA
LOC_Os02g03230
Os.11750.1.A1_at--971--2871Chr02:1289488..1289512 (25 bp)
AAGGGCTGTTGACCAAGGCTCTCAT
LOC_Os02g03230
Os.11750.1.A1_at--122--9531Chr02:1289469..1289493 (25 bp)
TCTCATCTTCGGTGTTGCACGGAAA
LOC_Os02g03230
Os.11750.1.A1_at--373--10811Chr02:1289423..1289447 (25 bp)
TTGTAGCATTACCTGATCTCTGTCA
LOC_Os02g03230
Os.11750.1.A1_at--345--8851Chr02:1289410..1289434 (25 bp)
TGATCTCTGTCACTAATCCTCTGAG
LOC_Os02g03230
Os.11750.1.A1_at--1112--3032Chr03:5985837..5986327 (25 bp)
AATCCTCTGAGCCAATCTGCTTATT
LOC_Os03g11580
Os.11750.1.A1_at--732--5111Chr02:1289359..1289383 (25 bp)
GCACATTCACTGTCTTGGCATGGAG
LOC_Os02g03230
Os.11750.1.A1_at--142--871Chr02:1289309..1289333 (25 bp)
ATGGCTGACATTGGCCTGTGGCACA
LOC_Os02g03230
Os.11750.1.A1_at--711--4051Chr02:1289250..1289274 (25 bp)
CGATGTATATACAACGCCGGCTGTT
LOC_Os02g03230
Os.11750.1.A1_at--172--8091Chr02:1289145..1289169 (25 bp)
GGAGCCTTTGTTTCTTGTAATCTGC
LOC_Os02g03230
Target Sequence 
CAAGGTTCCTTGTGCTCGGTGGAGCTGTTGCTCTGGCTTGCACTCTTGATCAAGGGCTGTTGACCAAGGCTCTCATCTTC
GGTGTTGCACGGAAATTTGTAGGGCAGAGGAACACATTGTAGCATTACCTGATCTCTGTCACTAATCCTCTGAGCCAATC
TGCTTATTGGATGAACACTGGCACATTCACTGTCTTGGCATGGAGGAATTGAGGAGGAGATGATGATCCAATGGCTGACA
TTGGCCTGTGGCACATGCCATGATGCCATTGAGGGCAGATGAAGGACTTCGATGTATATACAACGCCGGCTGTTGGATAA
TGAGAAAGAGAGGCAATGGAGTAAAAAATCTGTACTTTTACATTTGGAAAAGGAATTCCAGCTATATATTACGTGGAGCC
TTTGTTTCTTGTAATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11750.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis