Browse Element(s) Details


Os.11759.1.S1_at

Description gb:AK067125.1
DB_XREF= gi:32977143
TID=Os.11759.1
CNT=101
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C28562(C61610),C25917(C11090)~similar to ARF GAP-like zinc finger-containing protein (OJ1720_F04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098J09, full insert sequence.
FL= gb:AK059690.1 gb:AK067240.1 gb:AK067125.1 gb:AK068892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3765011/11GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37630Os.46438.1.A1_s_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37630Os.25640.1.S1_at11/117+22558805..22563004transposon protein, putative, unclassified, expressed
LOC_Os07g37640Os.44676.1.S1_at11/117+22564063..22569813IKI3 family protein, putative, expressed
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005634cellular_componentnucleus
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11759.1.S1_at--509--7671Chr07:22571332..22571356 (25 bp)
GGGTTGGCTCCAGTAGCAGCACAGA
LOC_Os07g37650
Os.11759.1.S1_at--72--2972Chr07:22571231..22571332 (25 bp)
AATGGTGCCACCAAGGTTGCGAACA
LOC_Os07g37650
Os.11759.1.S1_at--386--2231Chr07:22571206..22571230 (25 bp)
ACAATCAGGAATTCTCTTTTGGGAA
LOC_Os07g37650
Os.11759.1.S1_at--268--10511Chr07:22571185..22571204 (20 bp)
TTCAATTTTAGTACACCTGGAGCAT
LOC_Os07g37650
Os.11759.1.S1_at--90--1551Chr07:22571020..22571044 (25 bp)
AGCATACAACACTAGCTCATCTGTC
LOC_Os07g37650
Os.11759.1.S1_at--539--10011Chr07:22571008..22571032 (25 bp)
TAGCTCATCTGTCCCAGCAAATGGG
LOC_Os07g37650
Os.11759.1.S1_at--763--7551Chr07:22570985..22571009 (25 bp)
GGGCCGCAAGTGCAGCTGCTAACAA
LOC_Os07g37650
Os.11759.1.S1_at--560--3791Chr07:22570935..22570959 (25 bp)
CTCCCCTCTCAATCAGGCAAAGAAT
LOC_Os07g37650
Os.11759.1.S1_at--406--3211Chr07:22570890..22570914 (25 bp)
CAAGGACTGTTCTCCAAGCGATGAA
LOC_Os07g37650
Os.11759.1.S1_at--171--2971Chr07:22570839..22570863 (25 bp)
AATGGGCCTGTATGCAACGATGGAC
LOC_Os07g37650
Os.11759.1.S1_at--42--6211Chr07:22570766..22570790 (25 bp)
GAGGCAGCATTTCTTCTTGTGGATA
LOC_Os07g37650
Target Sequence 
GGGTTGGCTCCAGTAGCAGCACAGAATGGTGCCACCAAGGTTGCGAACAACAATCAGGAATTCTCTTTTGGGAATTTCAA
TTTTAGTACACCTGGAGCATACAACACTAGCTCATCTGTCCCAGCAAATGGGGCCGCAAGTGCAGCTGCTAACAAGAGCA
CATCCCCGACCTCTTCTTCCCTCCCCTCTCAATCAGGCAAAGAATATGATTTTTCATCATTAACTCAAGGACTGTTCTCC
AAGCGATGAACACTTGCTATACTTGGAAATTAAACAAATGGGCCTGTATGCAACGATGGACACAGNAGATTTTATTAGGG
GGAACCGGGGGCCTTGTACACTCTTTTATGAGGCAGCATTTCTTCTTGTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis